MidgeBase gene description page [Pn.07545]
Outline
| Gene ID | Pn.07545 |
| Type | Protein coding gene |
| Scaffold | PnScaf6953 |
| Start | 27334 |
| End | 28052 |
| Direction | + |
Sequence
Transcript: 651 (bp)
ATGAAGGGCAATCAAATGATTCCAAATGCCCACTTTCACAAGTGGTGGCAACGCTTCGTAAGAACCTGGTTCAACCAGCCAGCCAGAAAGTATCGTCGTCGTCAAAACCGTATTGCAAAGGCGAAAGCAGCTTTCCCGAGACCTGCCTCAAAGTTGCGCCCAATCGTGAGATGTCCATCGATCCGCTATCACACAAAGCTTCGCATGGGTCGCGGTTTCTCGTTGGCTGAACTGAAGGCTGCAGGACTTACAGCTGGATTCGCACGCTCAGTTGGAATTTCAGTCGACGCACGTCGCCGCAACAAGTCCGTCGAGTCGCGCCAACAAAACGTTCAGCGCCTCAAGGAATACCAGAATAAGCTGATCCTCTTCCCAGTTCATCCAAACAAGAAGAACTTGAAGTTGCGTAAGGGAGAGGCAACTGAGGAAGAGCGCAAATTGGCCACACAGCTGACTGGAACAATCATGCCGATCGTGAAAACCAAACCGACGATTGAATTCCGTGCTATTAAGGATGATGAAAAGAAATTCTCAGCCTTTAATGCAATTCACTGTGCTCGCGTTGCTGCACGTACAGCTGGCAAGCGCGCCAAGGCAGCAAAGGATGCTGCTGAAGCCGCTGAAAATGCACCAGGCGCAAAGAAGGATAAA
Protein: 217 (aa)
MKGNQMIPNAHFHKWWQRFVRTWFNQPARKYRRRQNRIAKAKAAFPRPASKLRPIVRCPSIRYHTKLRMGRGFSLAELKAAGLTAGFARSVGISVDARRRNKSVESRQQNVQRLKEYQNKLILFPVHPNKKNLKLRKGEATEEERKLATQLTGTIMPIVKTKPTIEFRAIKDDEKKFSAFNAIHCARVAARTAGKRAKAAKDAAEAAENAPGAKKDK
| Type | Start | End | Length |
| CDS |
27334 |
27570 |
237 |
| CDS |
27636 |
28049 |
414 |
| intron |
27571 |
27635 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ABM55728 |
ribosomal protein L13, partial [Chironomus thummi] |
8e-86 |
| InterPro |
IPR018256 |
Ribosomal protein L13e, conserved site |
|
| InterPro |
IPR001380 |
Ribosomal protein L13e |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF09891.4 |
Uncharacterized protein conserved in archaea (DUF2118) |
0.038 |
| Pfam |
PF01294.13 |
Ribosomal protein L13e |
6e-75 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000376811 |
| H. melpomene |
HMEL013336-PA |
| T. castaneum |
TC014183 |
| B. mori |
BGIBMGA003726-TA |
| H. melpomene |
HMEL013336-PB |
| S. invicta |
SI2.2.0_12230 |
| H. sapiens |
ENSP00000455009 |
| H. sapiens |
ENSP00000307889 |
| N. vitripennis |
NV13008-PB |
| P. vanderplanki |
Pv.02677 |
| A. gambiae |
AGAP001805 |
| P. humanus |
PHUM361430-PA |
| D. plexippus |
DPOGS203823PA |
| N. vitripennis |
NV13008-PA |
| M. musculus |
ENSMUSG00000000740 |
| M. musculus |
ENSMUSG00000059835 |
| A. mellifera |
GB17286-PA |
| A. aegypti |
AAEL005097 |
| D. melanogaster |
FBgn0011272 |