MidgeBase gene description page [Pn.07538]
Outline
| Gene ID | Pn.07538 |
| Type | Protein coding gene |
| Scaffold | PnScaf6953 |
| Start | 3961 |
| End | 12593 |
| Direction | + |
Sequence
Transcript: 1725 (bp)
ATGCTATATCAACACCTGGTGTCTTCAATAAATCGTGTGTTGAGGAATTTGGCAGCCCAAAAAGAGCAACAGCAGCAGCAACAGACACACCCGACGTCGGCGACCAACAACGTGCCGATCAACAGCTACCAGCCCACGTCGCTCGTGAACGACGCCATCTACGACAAGCTGCGGCTGCTGAACAACAACCATCGTCATCAGTCGATCCGCGACTCGTGCTGGCCGCCGCGAAGCCCCACCTCCTGGTATCCCCATCTCAACTCGCACCATCAGCAGCAGGAGCCGGGCAGCCTCGGTGCCAATGACGCGGCCGCAAATCCGCTCACGACCAACATCATGTCGCCGCAATCGTCCACGCCAATCAAGGAGTATTCGTCGCTCAGTCCCAACTCGTGCAAGGCCTCGTCCACCAATGATGACTTGACGAAAGCGGCGTCGAAAAAAGAAACGCAATCGGATGGAAATCTTTCCGGCGGTGAGGGCGAAAATTCAAACACCGACTCAACAATTGACACCGATGACGATCAGGCGAGATTGAGGCTAAAGAGAAAATTGCAGCGTAATCGCACTTCGTTTTCGAATGATCAAATTGACAGCCTGGAAAAGGAGTTCGAGCGCACCCACTACCCCGATGTCTTTGCTAGGGAGCGTCTCGCTGTCAAGATTGGCCTGCCCGAAGCTCGCATCCAAGTCTGGTTCTCGAATCGAAGAGCAAAATGGCGACGGGAGGAGAAGCTGAGGACGCAGCGTTTAACAACCCCGAACAGCAGCAACAACAACAACTCATTGAATGTCAATAACAACAACAACACGAACACGAACAACAACAACAACAATAGTAATGAAATCAGCTGTGCCAATGATACGAACTCATCGACGGAAACAAATCCCAAGGCGAACGTCAATGCGGACTCGTCGAACATAAATAGCATGCTGCACAACTCGCACGTCGCTGGCAATTTGAGCGAGACACACAACAATGCGGGCATCCTCGGGGACATGCACAACTCACTGATGAACGGTAATCATCATTTATCGACTCCATCGAGCTTAATCACGCCAACATCATCATCGCTTTCGCCTCCGCGCTTCAACTTTAATCACGGCTTCTGCGGCACCATGAGTCCGATGTACACGCCACAAATGTCCATTTCCGACTCATATAGTTCGATGCCATTTTCGCATGCACCAATCAGTTCAATGGCAAGCTTATCGTCGAATCCTCTCGGCATTCAGCAGCAGCACCAGCATGTACAGCACAAATACGATACGGTTCAGCATCAAAATTATCATCAACGTACTGAAGACATGACTCCACCCTCAACATATCAATGTCACATGTCGCGATTGAATATTCCGTCGCCTTCACTGCAATCACTGCACCAAGCACCGCACTCGGGTTTATCAACACTTCAGAATCATCACACGTACTCGTCGAGTTCATCTTCTCCGCACAGTGCACCGCTCGATGCGACTCAAGCTCACACCATCCCGCCCGCCACCAGCCCTCCCTCCTCGCTCGCGCCGCCGAGCTCCATCTACTCCTACGATCCGATCAACATCGGGGGATATCCGTCGACGCGACTTTCACCGTGCGGTTCCAGCGACAACTACCAGCTCAACGGTGGCTCCTACGGAAATGCGCCCAACGGAGGTTCTGGCTTGATATCGTCGCTCCACAATCCGTCGTCCTCGGACATGGCGCACTACTTTCTCCGTCTTCAA
Protein: 575 (aa)
MLYQHLVSSINRVLRNLAAQKEQQQQQQTHPTSATNNVPINSYQPTSLVNDAIYDKLRLLNNNHRHQSIRDSCWPPRSPTSWYPHLNSHHQQQEPGSLGANDAAANPLTTNIMSPQSSTPIKEYSSLSPNSCKASSTNDDLTKAASKKETQSDGNLSGGEGENSNTDSTIDTDDDQARLRLKRKLQRNRTSFSNDQIDSLEKEFERTHYPDVFARERLAVKIGLPEARIQVWFSNRRAKWRREEKLRTQRLTTPNSSNNNNSLNVNNNNNTNTNNNNNNSNEISCANDTNSSTETNPKANVNADSSNINSMLHNSHVAGNLSETHNNAGILGDMHNSLMNGNHHLSTPSSLITPTSSSLSPPRFNFNHGFCGTMSPMYTPQMSISDSYSSMPFSHAPISSMASLSSNPLGIQQQHQHVQHKYDTVQHQNYHQRTEDMTPPSTYQCHMSRLNIPSPSLQSLHQAPHSGLSTLQNHHTYSSSSSSPHSAPLDATQAHTIPPATSPPSSLAPPSSIYSYDPINIGGYPSTRLSPCGSSDNYQLNGGSYGNAPNGGSGLISSLHNPSSSDMAHYFLRLQ
| Type | Start | End | Length |
| CDS |
3961 |
3978 |
18 |
| CDS |
5336 |
5762 |
427 |
| CDS |
11006 |
11192 |
187 |
| CDS |
11266 |
11343 |
78 |
| CDS |
11431 |
11886 |
456 |
| CDS |
11959 |
12452 |
494 |
| CDS |
12526 |
12590 |
65 |
| intron |
3979 |
5335 |
1357 |
| intron |
5763 |
11005 |
5243 |
| intron |
11193 |
11265 |
73 |
| intron |
11344 |
11430 |
87 |
| intron |
11887 |
11958 |
72 |
| intron |
12453 |
12525 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003246858 |
PREDICTED: paired box protein Pax-6-like isoform 1 [Acyrthosiphon pisum] ref|XP_003246860.1| PREDICTED: paired box protein Pax-6-like isoform 3 [Acyrthosiphon pisum] |
4e-55 |
| InterPro |
IPR017970 |
Homeobox, conserved site |
|
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF05053.8 |
Menin |
0.3 |
| Pfam |
PF00046.24 |
Homeobox domain |
1.5e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ006390 |
| H. melpomene |
HMEL009702-PA |
| D. melanogaster |
FBgn0005558 |
| A. gambiae |
AGAP000063 |
| P. vanderplanki |
Pv.02685 |
| A. aegypti |
AAEL002321 |