MidgeBase gene description page [Pn.07529]
Outline
| Gene ID | Pn.07529 |
| Type | Protein coding gene |
| Scaffold | PnScaf6925 |
| Start | 91927 |
| End | 93589 |
| Direction | - |
Sequence
Transcript: 1314 (bp)
ATGGGCCAAAATCAATCTTCTGGAAGTGGAGGCGATAAAAAGGATGACAAAGACAAAAAGAAAAAGTATGAGCCGCCAATTCCGACTCGCGTTGGCAAGAAGAAGCGAAAGCAAAAGGGACCAGACGCAGCTCTCAAACTGCCCCAAGTAACTCCTCATACTCGCTGTCGATTGAAGCTTCTGAAACTCGAGCGAATTAAGGACTACTTGCTCATGGAGGAGGAATTTATCCGCAATCAGGAGCGCTTGAAGCCACAAGAAGAGAAGAACGAGGAGGAGAGATCAAAAGTCGACGACTTGAGAGGAACACCGATGTCGGTTGGCAATCTTGAAGAAATTATCGATGACAATCACGCAATCGTCTCGACTTCTGTCGGTAGCGAGCACTATGTGAGCATTCTCTCCTTCGTCGATAAGGACCAACTCGAACCAGGTTGTTCGGTCTTGCTGAATCATAAGGTTCATGCCGTTGTTGGCGTTTTGAGTGACGACACTGATCCAATGGTGACTGTAATGAAGCTCGAGAAGGCGCCGCAGGAAACTTATGCTGATATCGGTGGATTAGACACACAAATTCAAGAGATTAAAGAATCTGTGGAACTGCCACTCACACATCCCGAGTACTACGAAGAAATGGGTATTAAGCCACCGAAGGGAGTGATTTTGTATGGACCGCCAGGAACGGGAAAAACACTTCTCGCAAAGGCTGTCGCTAACCAAACGTCGGCAACCTTCCTGCGTGTTGTTGGATCAGAGCTGATTCAAAAGTATTTGGGTGATGGTCCTAAGCTCGTGCGAGAGCTCTTCAGGGTTGCTGAGGAGCACGCACCGTCCATAGTCTTTATCGACGAAATTGATGCTGTCGGCACAAAGCGTTACGATTCAAACTCTGGTGGCGAAAGGGAAATTCAGAGAACAATGTTGGAGTTGCTCAATCAATTGGACGGCTTTGATTCACGCGGCGATGTCAAAGTCATTATGGCAACAAATAGAATCGAGACTCTCGATCCAGCTCTCATTCGCCCCGGTAGAATTGATCGCAAAATCGAATTCCCACTCCCCGACGAGAAGACAAAGCGTAGGATTTTCAATATTCACACATCAAAGATGACATTGGCCACTGATGTTAATCTTTCCGAACTGATCATGGCAAAGGACGATTTGTCTGGAGCCGATATTAAAGCTATTTGCACTGAGGCCGGTTTGATGGCACTGCGTGAGCGTCGCATGAAAGTTACGAATGATGATTTCAAGAAATCGAAAGAGAGCGTGCTTTATCGTAAGAAAGAGGGAACTCCTGATGGCTTATATTTG
Protein: 438 (aa)
MGQNQSSGSGGDKKDDKDKKKKYEPPIPTRVGKKKRKQKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSKMTLATDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNDDFKKSKESVLYRKKEGTPDGLYL
| Type | Start | End | Length |
| CDS |
91930 |
92469 |
540 |
| CDS |
92525 |
92865 |
341 |
| CDS |
93039 |
93468 |
430 |
| CDS |
93587 |
93589 |
3 |
| intron |
92470 |
92524 |
55 |
| intron |
92866 |
93038 |
173 |
| intron |
93469 |
93586 |
118 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR28883 |
hypothetical protein AND_02632 [Anopheles darlingi] gb|EFR28884.1| hypothetical protein AND_02633 [Anopheles darlingi] |
0.0 |
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003959 |
ATPase, AAA-type, core |
|
| InterPro |
IPR003960 |
ATPase, AAA-type, conserved site |
|
| InterPro |
IPR005937 |
26S proteasome subunit P45 |
|
| Gene Ontology(BP) |
GO:0030163 |
protein catabolic process |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Pfam |
PF13207.1 |
AAA domain |
0.0004 |
| Pfam |
PF01202.17 |
Shikimate kinase |
0.0045 |
| Pfam |
PF02562.11 |
PhoH-like protein |
0.01 |
| Pfam |
PF05729.7 |
NACHT domain |
0.018 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
5.1e-05 |
| Pfam |
PF00625.16 |
Guanylate kinase |
0.057 |
| Pfam |
PF13481.1 |
AAA domain |
0.00058 |
| Pfam |
PF06414.7 |
Zeta toxin |
0.012 |
| Pfam |
PF07724.9 |
AAA domain (Cdc48 subfamily) |
6.4e-07 |
| Pfam |
PF01695.12 |
IstB-like ATP binding protein |
0.00062 |
| Pfam |
PF06068.8 |
TIP49 C-terminus |
0.011 |
| Pfam |
PF01057.12 |
Parvovirus non-structural protein NS1 |
0.086 |
| Pfam |
PF00910.17 |
RNA helicase |
0.0041 |
| Pfam |
PF13245.1 |
Part of AAA domain |
0.0014 |
| Pfam |
PF06745.8 |
KaiC |
0.0024 |
| Pfam |
PF05673.8 |
Protein of unknown function (DUF815) |
3.6e-05 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.00028 |
| Pfam |
PF13401.1 |
AAA domain |
1.4e-07 |
| Pfam |
PF13479.1 |
AAA domain |
0.014 |
| Pfam |
PF13604.1 |
AAA domain |
0.069 |
| Pfam |
PF13521.1 |
AAA domain |
0.0032 |
| Pfam |
PF13671.1 |
AAA domain |
0.0025 |
| Pfam |
PF00931.17 |
NB-ARC domain |
0.025 |
| Pfam |
PF00158.21 |
Sigma-54 interaction domain |
0.12 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
5.9e-43 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
0.013 |
| Pfam |
PF13238.1 |
AAA domain |
0.0033 |
| Pfam |
PF13173.1 |
AAA domain |
0.0012 |
| Pfam |
PF05496.7 |
Holliday junction DNA helicase ruvB N-terminus |
5.1e-05 |
| Pfam |
PF07726.6 |
ATPase family associated with various cellular activities (AAA) |
0.0062 |
| Pfam |
PF13086.1 |
AAA domain |
0.017 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ801917 |
| A. gambiae |
AGAP003216 |
| A. mellifera |
GB15218-PA |
| H. sapiens |
ENSP00000261303 |
| P. vanderplanki |
Pv.09408 |
| M. musculus |
ENSMUSG00000021178 |
| B. mori |
BGIBMGA004908-TA |
| P. humanus |
PHUM546010-PA |
| A. aegypti |
AAEL012095 |
| T. castaneum |
TC009675 |
| H. melpomene |
HMEL005094-PA |
| D. plexippus |
DPOGS202257PA |
| A. gambiae |
AGAP003215 |
| D. plexippus |
DPOGS202256PA |
| H. sapiens |
ENSP00000445147 |
| D. melanogaster |
FBgn0015282 |
| N. vitripennis |
NV15169-PA |