MidgeBase gene description page [Pn.07497]
Outline
| Gene ID | Pn.07497 |
| Type | Protein coding gene |
| Scaffold | PnScaf6913 |
| Start | 37629 |
| End | 39264 |
| Direction | + |
Sequence
Transcript: 1275 (bp)
ATGATTCTCAATTCATGTCTTGTGTCGAGAAATTTATTGAAAAACGTGAGCGTTCTGCTCTGTAAACAACCAAACGCAATCGTGAAAAATGCATACAACACGAAATTGTTCAGAACATCGCCTCTACAAAATCAAACGGGATGGCTGATGCCGAAAAATAAGATTAAGCAATTCTTCCCGCTGACGAGATTTTGTACAAAGGCCAATGAGCCAGTCGCCAAGGGTCAAAAGGCTGTGGGCTGGTGGCTCGCGGGATGTTCCGGCATGGTCTTCGTTGCAGTCGCTCTAGGCGGCGTAACGAGACTAACCGAATCGGGCCTATCAATGTCACATTGGAAACTTTTGGGAGAAAAGCCGCCGACAACTCAAGAAGACTGGATCCGGGAATTCGAAATCTACAAGCAGTTTCCCGAATTCAAAATAAAAAACCAGGAAATGACTTTGGAGGAGTTTAAATTCATATTTTGGATGGAGTATGGACATCGAATGTGGGGCCGAATGATCGGAGCCTTCTTCGCTATACCTGCTGCGTATTTCTGGTCCAAAGGCTATTTTAACAAGGGCATGAAGATCAAAGTCGGAATTTTCGGAACACTGATTGGACTGCAGGGCTTGATGGGCTGGTACATGGTCAAGTCGGGACTCGAGGATAGATTTCATGGAGAAAATGATGTGCCGCGTGTTTCTCAATATCGACTTGCTGCTCATTTGTCGTTCGCATTCGCGCTCTACATTCTGTTCCTGATGTCATCTTTCGACCACTTGCTGCCGACAAAACAGCAGGCGATTGAGACGACTGCAAAAGCGCTGAAACTCAGAAAGCTTGCACACATTTCCAAAGGAATGGTTTTCCTGACTGCCGTGTCGGGCGCATTTGTAGCTGGCTTAGATGCAGGCCTCGTGTACAATTCATTTCCGAAATTCGCTGACCGATGGATACCGAGTGACTTGCTAGCATTTTCGCCAACTATCCGAAACTTCACGGAGAATCCTACGACGGTGCAGTTCGATCATCGCATTTTGGGAACAGCAACACTCGCTCTTATCACTGGCATGTACATGCTCTCAAGAAAGTGTAAACTACCTCCACGTGCACACAAGGCAGCAACGGCTGTGGCAATCATGGGCTGGATGCAAGTGGCTTTAGGCATTTCCACTCTTTTGACATATGTTCCAGTCACGTTAGCAACAAGCCATCAGTCGGGCTCATTAATTCTTCTTAGCATGGCAGTGTGGCTTACTCATGAACTCAAATATTTGAAGAAAATACCAAAA
Protein: 425 (aa)
MILNSCLVSRNLLKNVSVLLCKQPNAIVKNAYNTKLFRTSPLQNQTGWLMPKNKIKQFFPLTRFCTKANEPVAKGQKAVGWWLAGCSGMVFVAVALGGVTRLTESGLSMSHWKLLGEKPPTTQEDWIREFEIYKQFPEFKIKNQEMTLEEFKFIFWMEYGHRMWGRMIGAFFAIPAAYFWSKGYFNKGMKIKVGIFGTLIGLQGLMGWYMVKSGLEDRFHGENDVPRVSQYRLAAHLSFAFALYILFLMSSFDHLLPTKQQAIETTAKALKLRKLAHISKGMVFLTAVSGAFVAGLDAGLVYNSFPKFADRWIPSDLLAFSPTIRNFTENPTTVQFDHRILGTATLALITGMYMLSRKCKLPPRAHKAATAVAIMGWMQVALGISTLLTYVPVTLATSHQSGSLILLSMAVWLTHELKYLKKIPK
| Type | Start | End | Length |
| CDS |
37629 |
37790 |
162 |
| CDS |
37868 |
37994 |
127 |
| CDS |
38154 |
38166 |
13 |
| CDS |
38226 |
38345 |
120 |
| CDS |
38409 |
39261 |
853 |
| intron |
37791 |
37867 |
77 |
| intron |
37995 |
38153 |
159 |
| intron |
38167 |
38225 |
59 |
| intron |
38346 |
38408 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001868025 |
cytochrome c oxidase assembly protein COX15 [Culex quinquefasciatus] gb|EDS25950.1| cytochrome c oxidase assembly protein COX15 [Culex quinquefasciatus] |
1e-156 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR003780 |
Heme A synthase |
|
| Gene Ontology(BP) |
GO:0006784 |
heme a biosynthetic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF02628.10 |
Cytochrome oxidase assembly protein |
4e-86 |
| Pfam |
PF11158.3 |
Protein of unknown function (DUF2938) |
0.19 |
| Pfam |
PF07642.6 |
Outer membrane protein family (DUF1597) |
0.0036 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000016171 |
| C. quinquefasciatus |
CPIJ017747 |
| S. invicta |
SI2.2.0_03850 |
| D. plexippus |
DPOGS209136PA |
| P. humanus |
PHUM420670-PA |
| B. mori |
BGIBMGA001309-TA |
| H. sapiens |
ENSP00000359514 |
| A. mellifera |
GB20115-PA |
| P. vanderplanki |
Pv.01251 |
| M. musculus |
ENSMUSG00000040018 |
| D. melanogaster |
FBgn0034938 |
| A. gambiae |
AGAP001744 |
| A. aegypti |
AAEL012426 |
| T. castaneum |
TC000219 |
| N. vitripennis |
NV17334-PA |