MidgeBase gene description page [Pn.07461]
Outline
| Gene ID | Pn.07461 |
| Type | Protein coding gene |
| Scaffold | PnScaf6872 |
| Start | 5406 |
| End | 11217 |
| Direction | - |
Sequence
Transcript: 1047 (bp)
ATGACGATGAGACGAAATGAGTTAATAGCGCGCTACATTAAGCTCAGAACTGGAAAGACGAGAACGCGAAAGCAAGTCAGCTCACACATACAAGTCTTAGCTAGAAGAAAATTACGCGAATTTCAAGCGAAAATGAAGGTGGACCATACGATGGGCAAAGAGAAAGCCTTTCAGACCATGAGCTCGATGACTTCCGCCCAATTAATATCAGTTGCAGCCAAGGGACTAACTTTAAATCCACAATGTATTCCTCCCTACACTCAATTCTGGCAGCCCGGACTCCAGCCGAGCACTTCAGCACAAGATGTCAAGCCGTTCTCACAGCCCGCTTATCCCGGCGGCGGAAAGACAGCGACCGCCGTCTCAGCCATCGACGGAAGTCTACAGTCGCAGCACGCCGAAGGACGATCCATTGCCACACAAAAGTTCCGACTCGTCGAATTCTCTGCATATCTCGATCTTAACACCGATGACACTTATCACAAGCATCTCTTTGTACATATAGCCGATCAGCCAACGCATCCGCTCCTCGAGTCAGTCGACGTGAAGGAGATTTACGACAAGTTCCCCCAGAAGAGCGGCGGCTTGAAGGAGCTGTACGAAAAAGGTCCTCAAAATGCCTTCTTTTTGGTCAAGTTCTGGGCCGATCTCAATACAAATATTCAAAACGATACTGGTGCATTTTACGGTGTCAGCAGTCACTTCGAGAGTAGTGAGAACGTAGTCATCACGTGTTCCACGAAAGTGTGTTCTTTTGGCAAGCAGGTGGTCGAGAAGGTCGAGACGGAATATTCGCGATTCGAGAATGGACGCTACGTGTACCGCATTCATCGGTCGCCGATGTGCGACTACATGATCAACTTCATCAACAAACTCAAACGACTGCCGGAGAAGTACATGATGAACAGTGTCTTAGAGAATTTTACCATCCTTCAGGTAATATCAAATAAGGAGACACAGGAGACCCTTCTGTGCATCGCATTCGTCTTTGAGGTGTCGACATCGGAACACGGTGCACAACATCACATCTACCGATTGATAAAGGAT
Protein: 349 (aa)
MTMRRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREFQAKMKVDHTMGKEKAFQTMSSMTSAQLISVAAKGLTLNPQCIPPYTQFWQPGLQPSTSAQDVKPFSQPAYPGGGKTATAVSAIDGSLQSQHAEGRSIATQKFRLVEFSAYLDLNTDDTYHKHLFVHIADQPTHPLLESVDVKEIYDKFPQKSGGLKELYEKGPQNAFFLVKFWADLNTNIQNDTGAFYGVSSHFESSENVVITCSTKVCSFGKQVVEKVETEYSRFENGRYVYRIHRSPMCDYMINFINKLKRLPEKYMMNSVLENFTILQVISNKETQETLLCIAFVFEVSTSEHGAQHHIYRLIKD
| Type | Start | End | Length |
| CDS |
5409 |
5519 |
111 |
| CDS |
5593 |
5827 |
235 |
| CDS |
5912 |
6135 |
224 |
| CDS |
6216 |
6431 |
216 |
| CDS |
9413 |
9532 |
120 |
| CDS |
10882 |
11012 |
131 |
| CDS |
11208 |
11217 |
10 |
| intron |
5520 |
5592 |
73 |
| intron |
5828 |
5911 |
84 |
| intron |
6136 |
6215 |
80 |
| intron |
6432 |
9412 |
2981 |
| intron |
9533 |
10881 |
1349 |
| intron |
11013 |
11207 |
195 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003437016 |
AGAP000512-PB [Anopheles gambiae str. PEST] gb|EGK96430.1| AGAP000512-PB [Anopheles gambiae str. PEST] |
1e-156 |
| InterPro |
IPR000818 |
TEA/ATTS |
|
| InterPro |
IPR016361 |
Transcriptional enhancer factor |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF01285.13 |
TEA/ATTS domain family |
9.7e-124 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000030353 |
| C. quinquefasciatus |
CPIJ013490 |
| A. gambiae |
AGAP000512 |
| H. sapiens |
ENSP00000345772 |
| P. humanus |
PHUM251000-PA |
| M. musculus |
ENSMUSG00000002249 |
| H. sapiens |
ENSP00000355332 |
| S. invicta |
SI2.2.0_14937 |
| N. vitripennis |
NV15824-PA |
| A. aegypti |
AAEL015035 |
| D. melanogaster |
FBgn0003345 |
| H. sapiens |
ENSP00000366419 |
| H. sapiens |
ENSP00000435233 |
| T. castaneum |
TC030781 |
| H. sapiens |
ENSP00000435393 |
| H. sapiens |
ENSP00000384577 |
| D. plexippus |
DPOGS205616PA |
| H. sapiens |
ENSP00000354588 |
| H. sapiens |
ENSP00000437928 |
| H. melpomene |
HMEL007347-PA |
| A. aegypti |
AAEL014670 |
| H. sapiens |
ENSP00000380311 |
| A. mellifera |
GB16486-PA |
| P. vanderplanki |
Pv.03245 |
| H. sapiens |
ENSP00000351184 |
| H. sapiens |
ENSP00000310701 |
| H. sapiens |
ENSP00000352926 |