MidgeBase gene description page [Pn.07430]
Outline
| Gene ID | Pn.07430 |
| Type | Protein coding gene |
| Scaffold | PnScaf6829 |
| Start | 5010 |
| End | 6318 |
| Direction | - |
Sequence
Transcript: 759 (bp)
ATGGAAAGAGAAAAAGACCACGGCTCCTATTCACTCTTTTATCACAAAAAACACATGCACGACATGTATCAGGATCTGTCTGAAGAACATCCACGAAAGCTTATCCCCGATTTGTGTCGACAGTTTTATAATCTTGGATGGGTGACAGGAACTGGGGGAGGTATTTCAATTAAACTTGACGACGAAATATATATCGCGCCGTCTGGAGTGCAAAAAGAGCGCATTCAAATAGATGACTTGTTCATACAAAATATTGATGGCGATGATATAGTTGTTCCACCAGAGTATAAAAAGTTAAAAAAATCTCAATGCACGCCTCTTTTTATGTGTGCATACAAGCTCCGAAATGCTGGTTCAGTCATCCATACGCATTCTCCTAATGCTGTTCTCGCTACATTACTTTGGCCAGAAAAGAATTTTCGTATTACACACCAGGAAATGATAAAGGGCATTTTTGATTACGAACTCAACAGATATTTGCACTACGATGAAAATCTTGTTGTTCCAATTATTGAAAATACTCCTTTGGAGAAGGATTTGGAAGAGACTTTGCGTCAGGCCATGGTTGATAATCCAGGAACTTCGGCAGTTTTAGTTCGTCGTCATGGAATATATGTCTGGGGAAAAACTTGGCAGTCAGCAAAGGCTCAATGCGAATGCTACGATTACTTATTTAATATTGCGATTGAGATGAAGAAGCTTGGACTTGATCCTGCTGCTGTGCCATCCTCTTCATCGGTAAACAAAAATTATAAGAAC
Protein: 253 (aa)
MEREKDHGSYSLFYHKKHMHDMYQDLSEEHPRKLIPDLCRQFYNLGWVTGTGGGISIKLDDEIYIAPSGVQKERIQIDDLFIQNIDGDDIVVPPEYKKLKKSQCTPLFMCAYKLRNAGSVIHTHSPNAVLATLLWPEKNFRITHQEMIKGIFDYELNRYLHYDENLVVPIIENTPLEKDLEETLRQAMVDNPGTSAVLVRRHGIYVWGKTWQSAKAQCECYDYLFNIAIEMKKLGLDPAAVPSSSSVNKNYKN
| Type | Start | End | Length |
| CDS |
5013 |
5324 |
312 |
| CDS |
5407 |
5594 |
188 |
| CDS |
5656 |
5766 |
111 |
| CDS |
5844 |
5907 |
64 |
| CDS |
6169 |
6236 |
68 |
| CDS |
6303 |
6318 |
16 |
| intron |
5325 |
5406 |
82 |
| intron |
5595 |
5655 |
61 |
| intron |
5767 |
5843 |
77 |
| intron |
5908 |
6168 |
261 |
| intron |
6237 |
6302 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_310624 |
AGAP000470-PA [Anopheles gambiae str. PEST] sp|Q7PS09.5|MTNB_ANOGA RecName: Full=Probable methylthioribulose-1-phosphate dehydratase; Short=MTRu-1-P dehydratase gb|EAA06311.6| AGAP000470-PA [Anopheles gambiae str. PEST] |
1e-100 |
| InterPro |
IPR001303 |
Class II aldolase/adducin N-terminal |
|
| InterPro |
IPR017714 |
Methylthioribulose-1-phosphate dehydratase |
|
| Gene Ontology(BP) |
GO:0071267 |
L-methionine salvage |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0046872 |
metal ion binding |
|
| Gene Ontology(MF) |
GO:0043167 |
ion binding |
|
| Pfam |
PF00596.16 |
Class II Aldolase and Adducin N-terminal domain |
8.5e-40 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000379133 |
| T. castaneum |
TC002174 |
| P. humanus |
PHUM105980-PA |
| B. mori |
BGIBMGA011049-TA |
| A. mellifera |
GB11537-PA |
| M. musculus |
ENSMUSG00000010911 |
| P. vanderplanki |
Pv.06283 |
| D. melanogaster |
FBgn0030518 |
| A. aegypti |
AAEL011830 |
| N. vitripennis |
NV22497-PA |
| A. gambiae |
AGAP000470 |
| C. quinquefasciatus |
CPIJ011357 |
| H. sapiens |
ENSP00000278359 |
| C. quinquefasciatus |
CPIJ011356 |
| H. melpomene |
HMEL016191-PA |
| D. plexippus |
DPOGS200973PA |