MidgeBase gene description page [Pn.07425]
Outline
| Gene ID | Pn.07425 |
| Type | Protein coding gene |
| Scaffold | PnScaf6822 |
| Start | 1676 |
| End | 2814 |
| Direction | - |
Sequence
Transcript: 624 (bp)
ATGGGTATTTCTCGCGATTCATTTCATAAACGCCGTGCCACCGGAGGCAAGAAGGCTCAGATCCGCAAGAAGCGAAAGTATGAATTGGGTCGTCCTCCAAGCAACACTAAGATCGGAGGCCAACGAGTTCACTTTGTGAGAACTCGCGGTGGAAACAGAAAATTCCGTGCTCTGCGTCTGGACGGCGGCAACTTCGCCTGGGCCTCACAAGGAGCAGCACGCAAGACAAGAATCCTTGATGTTGTCTACAATGCATCAAACAATGAACTTGTCCGTACCAAGACTTTGGTAAAGAACTGCATCATTACGATTGACGCTACTCCTTTCAAGCAGTACTACGAAAGTCATTACTTGCTTCCGCTCGGCCGCAAGAAGGACCACAAAATCCCCGAGGGCGAGGAGGATCCGCTGACAAAGAAACGCGGCAAGGATGCATTGAAGAAGTACGAGGAACGTCAAAAGTTTGCAAAGGTCGAACCAGCATTGGAAGAACAATTCTTGCAGGGACGTCTGCTAGCCGCTATCTCTAGCCGACCAGGCCAATGCGGACGTGCTGACGGCTACATCTTGGAAGGAAAGGAACTCGAGTTCTATGTTAAGAAAATCAAGTCTAAGAAATCAAAG
Protein: 208 (aa)
MGISRDSFHKRRATGGKKAQIRKKRKYELGRPPSNTKIGGQRVHFVRTRGGNRKFRALRLDGGNFAWASQGAARKTRILDVVYNASNNELVRTKTLVKNCIITIDATPFKQYYESHYLLPLGRKKDHKIPEGEEDPLTKKRGKDALKKYEERQKFAKVEPALEEQFLQGRLLAAISSRPGQCGRADGYILEGKELEFYVKKIKSKKSK
| Type | Start | End | Length |
| CDS |
1679 |
1785 |
107 |
| CDS |
2008 |
2413 |
406 |
| CDS |
2548 |
2654 |
107 |
| CDS |
2811 |
2814 |
4 |
| intron |
1786 |
2007 |
222 |
| intron |
2414 |
2547 |
134 |
| intron |
2655 |
2810 |
156 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAV84252 |
ribosomal protein S8 [Culicoides sonorensis] |
5e-91 |
| InterPro |
IPR001047 |
Ribosomal protein S8e |
|
| InterPro |
IPR018283 |
Ribosomal protein S8e, conserved site |
|
| InterPro |
IPR022309 |
Ribosomal protein S8e/ribosomal biogenesis NSA2 |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF01201.17 |
Ribosomal protein S8e |
5.6e-50 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000060198 |
| H. sapiens |
ENSP00000379888 |
| H. melpomene |
HMEL015245-PA |
| D. melanogaster |
FBgn0039713 |
| C. quinquefasciatus |
CPIJ011589 |
| A. gambiae |
AGAP002437 |
| A. aegypti |
AAEL008103 |
| D. plexippus |
DPOGS208705PA |
| P. humanus |
PHUM212320-PA |
| A. mellifera |
GB13741-PA |
| N. vitripennis |
NV13407-PA |
| M. musculus |
ENSMUSG00000047675 |
| T. castaneum |
TC014757 |
| P. vanderplanki |
Pv.10037 |
| B. mori |
BGIBMGA003397-TA |