MidgeBase gene description page [Pn.07367]
Outline
| Gene ID | Pn.07367 |
| Type | Protein coding gene |
| Scaffold | PnScaf6726 |
| Start | 15814 |
| End | 17138 |
| Direction | - |
Sequence
Transcript: 1074 (bp)
ATGGCACCTCGTGAGGTCGTCAAGACATCCGAAATATCGGTCAACGGAGTTCTGAACGAGAACGATGTTGAGACAATCGATGGAGGCTTGAGCAAGGCTCCGCAGGCGTATGCTAGACGCAGAAACCTCAAGCTCGTATGGCGCAACATCATTCTCTTCGCATATCTCCATCTGGCAGCTGTTTATGGACTGTGGCTCATGCTGACATCGGCGAAATGGTCAACGGGAGCTTTCGCGATGACGCTTTATGCAATGTCAGGATTGGGAATTACGGCAGGTGCGCATCGCTTGTGGGCACATCGTGCCTACAAAGCCAAATGGCCCCTGCGCATCATTCTGACGCTCTTCAACACGATCGCTTTCCAAGATTGCGCCATTCATTGGGCACGCGACCATAGAGTTCATCACAAATACAGTGAGACCGATGCTGACCCGCACAACGCCACGCGCGGCTTTTTCTTCTCTCATATTGGCTGGCTCTTGTGCCGCAAACATCCCGACGTCATTGCGGCCGGCAAGAAGCTCGACATCTCCGACTTGCAAGCCGATCCAATCTTGCGATTCCAGAAAAAATACTACTTGATTCTCATGCCAGTGTTCTGCTTCATTCTTCCGACCATCGCGCCCGTCTACTTCTGGGGTGAATCGTGGAAAAATGCATGGTTTGTCGCGACAATGTTCCGCTACACATTCATCCTCAACGTCACCTGGTTGGTCAACAGCGCAGCTCACAAATACGGTGGCAAGCCATACGACAAGTATATCAGCCCATCAGAGAACATGTCAGTCGCCATCTTTGCCCTCGGTGAAGGATTCCACAACTACCATCATGTTTTCCCCTGGGACTACAAGACGGCCGAGCTCGGAAACTACAGAATGAATTTCACGACTGCATTTATCGACTTCTTCGCCAAGATCGGCTGGGCGTACGACTTGAAGACCGTCTCGGACGAGATCATTCAGAAGAGAGTCGAGCGAACTGGAGACGGCAGTCACACATTGTGGGGCTATGGCGATCCAGCGCAGAACGAAGAAGAGAAGAATATGATTCCAGTTTTACACAAGAAAGAAGAC
Protein: 358 (aa)
MAPREVVKTSEISVNGVLNENDVETIDGGLSKAPQAYARRRNLKLVWRNIILFAYLHLAAVYGLWLMLTSAKWSTGAFAMTLYAMSGLGITAGAHRLWAHRAYKAKWPLRIILTLFNTIAFQDCAIHWARDHRVHHKYSETDADPHNATRGFFFSHIGWLLCRKHPDVIAAGKKLDISDLQADPILRFQKKYYLILMPVFCFILPTIAPVYFWGESWKNAWFVATMFRYTFILNVTWLVNSAAHKYGGKPYDKYISPSENMSVAIFALGEGFHNYHHVFPWDYKTAELGNYRMNFTTAFIDFFAKIGWAYDLKTVSDEIIQKRVERTGDGSHTLWGYGDPAQNEEEKNMIPVLHKKED
| Type | Start | End | Length |
| CDS |
15817 |
16059 |
243 |
| CDS |
16122 |
16194 |
73 |
| CDS |
16255 |
16596 |
342 |
| CDS |
16667 |
16847 |
181 |
| CDS |
16904 |
17138 |
235 |
| intron |
16060 |
16121 |
62 |
| intron |
16195 |
16254 |
60 |
| intron |
16597 |
16666 |
70 |
| intron |
16848 |
16903 |
56 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR29815 |
hypothetical protein AND_00961 [Anopheles darlingi] |
1e-161 |
| InterPro |
IPR015876 |
Fatty acid desaturase, type 1, core |
|
| InterPro |
IPR005804 |
Fatty acid desaturase, type 1 |
|
| InterPro |
IPR001522 |
Fatty acid desaturase, type 1, C-terminal |
|
| Gene Ontology(BP) |
GO:0006633 |
fatty acid biosynthetic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005783 |
endoplasmic reticulum |
|
| Gene Ontology(MF) |
GO:0005506 |
iron ion binding |
|
| Gene Ontology(MF) |
GO:0004768 |
stearoyl-CoA 9-desaturase activity |
|
| Gene Ontology(MF) |
GO:0016717 |
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
|
| Pfam |
PF00487.19 |
Fatty acid desaturase |
3.6e-17 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000409887 |
| H. melpomene |
HMEL012052-PA |
| N. vitripennis |
NV14294-PA |
| H. sapiens |
ENSP00000359380 |
| H. melpomene |
HMEL015726-PA |
| N. vitripennis |
NV14293-PA |
| T. castaneum |
TC014821 |
| P. vanderplanki |
Pv.01078 |
| B. mori |
BGIBMGA010681-TA |
| N. vitripennis |
NV14980-PA |
| M. musculus |
ENSMUSG00000037071 |
| D. plexippus |
DPOGS208534PA |
| A. mellifera |
GB11969-PA |
| M. musculus |
ENSMUSG00000025202 |
| H. sapiens |
ENSP00000316329 |
| T. castaneum |
TC016415 |
| T. castaneum |
TC014820 |
| B. mori |
BGIBMGA010365-TA |
| A. gambiae |
AGAP001713 |
| S. invicta |
SI2.2.0_02248 |
| D. melanogaster |
FBgn0043043 |
| P. humanus |
PHUM128340-PA |
| P. humanus |
PHUM128310-PA |
| D. melanogaster |
FBgn0038130 |
| A. aegypti |
AAEL003203 |
| S. invicta |
SI2.2.0_09878 |
| D. melanogaster |
FBgn0086687 |
| C. quinquefasciatus |
CPIJ011097 |
| D. plexippus |
DPOGS205799PA |
| C. quinquefasciatus |
CPIJ013748 |
| A. gambiae |
AGAP003418 |
| A. mellifera |
GB11596-PA |
| A. aegypti |
AAEL007213 |
| B. mori |
BGIBMGA010676-TA |
| T. castaneum |
TC011471 |
| D. plexippus |
DPOGS213705PA |
| M. musculus |
ENSMUSG00000050195 |
| M. musculus |
ENSMUSG00000025203 |