MidgeBase gene description page [Pn.07351]
Outline
| Gene ID | Pn.07351 |
| Type | Protein coding gene |
| Scaffold | PnScaf6714 |
| Start | 2227 |
| End | 3023 |
| Direction | + |
Sequence
Transcript: 648 (bp)
ATGCATCAACAATATCTAAATAACGCAACAAGCAGCCTACACTCTCTATCGAGCGATGAGCTACGCGAAATATTTGGAGACGACGATAAACTAGATGAGCGCATAGATCAAATTCTTAAATCACTCGAGAATGAAAAAGATGTTATTATTACTGAAAACAGGACATTAGCCGAAAGCAACTTGGAGAAAGAGCCAATGCTAATAGAGATGAGATCAAAAATCAACGATTTATCTGAGGAATTCCGAAATCTTAGTGAAAATGTTCAACTCAAGCTCACACAAATCAAATCGAAAGCATCTACGACAGATCCGGAATCGGTTTTAGCGCGATTGCAGGCAGCCGCGGCCGAGGCGGAGGAGAAGAGCGACAAGCTCGCTGACGACTTTTTCGACAGCAGCCTCTCGCTCGACGAATTCCTGGAGCAGTTCAAACAGTCCCGCACAGAGATGCATTTAAGAAAATTGAAGGCGGAGAAGATGCAGGAACTTCTGAGACGGGGAGCTCATCACGCACCGACATCCCATTTACCGCACTCGGGAGGCTTTTCGACTGGCTTCTACCCGAGTCCAGGCTCTAGCGCTCCGTATCCAAGCATGCCCGGATTTCCGATGCCAATGATGCCTCAGCCCAGCCTAAGGCCGCCATTC
Protein: 216 (aa)
MHQQYLNNATSSLHSLSSDELREIFGDDDKLDERIDQILKSLENEKDVIITENRTLAESNLEKEPMLIEMRSKINDLSEEFRNLSENVQLKLTQIKSKASTTDPESVLARLQAAAAEAEEKSDKLADDFFDSSLSLDEFLEQFKQSRTEMHLRKLKAEKMQELLRRGAHHAPTSHLPHSGGFSTGFYPSPGSSAPYPSMPGFPMPMMPQPSLRPPF
| Type | Start | End | Length |
| CDS |
2227 |
2340 |
114 |
| CDS |
2410 |
2581 |
172 |
| CDS |
2659 |
3020 |
362 |
| intron |
2341 |
2409 |
69 |
| intron |
2582 |
2658 |
77 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001359406 |
GA10797 [Drosophila pseudoobscura pseudoobscura] gb|EAL28552.1| GA10797 [Drosophila pseudoobscura pseudoobscura] |
8e-48 |
| InterPro |
IPR009851 |
Modifier of rudimentary, Modr |
|
| Pfam |
PF07765.7 |
KIP1-like protein |
0.048 |
| Pfam |
PF07106.8 |
Tat binding protein 1(TBP-1)-interacting protein (TBPIP) |
3.5 |
| Pfam |
PF11621.3 |
C3 binding domain 4 of IgG-bind protein SBI |
0.079 |
| Pfam |
PF12920.2 |
TcdA/TcdB pore forming domain |
0.036 |
| Pfam |
PF01927.11 |
Protein of unknown function DUF82 |
0.004 |
| Pfam |
PF07200.8 |
Modifier of rudimentary (Mod(r)) protein |
4.3e-35 |
| Pfam |
PF03962.10 |
Mnd1 family |
0.45 |
| Pfam |
PF03233.8 |
Aphid transmission protein |
0.8 |
| Pfam |
PF07606.6 |
Protein of unknown function (DUF1569) |
0.012 |
| Pfam |
PF10046.4 |
Biogenesis of lysosome-related organelles complex-1 subunit 2 |
3.6 |
| Pfam |
PF03255.9 |
Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit |
1.9 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM214090-PA |
| N. vitripennis |
NV15668-PA |
| D. melanogaster |
FBgn0037299 |
| H. sapiens |
ENSP00000446075 |
| A. gambiae |
AGAP003731 |
| T. castaneum |
TC014972 |
| B. mori |
BGIBMGA012873-TA |
| H. sapiens |
ENSP00000267202 |
| D. plexippus |
DPOGS206954PA |
| H. melpomene |
HMEL014353-PA |
| C. quinquefasciatus |
CPIJ001393 |
| M. musculus |
ENSMUSG00000066278 |
| A. mellifera |
GB19312-PA |
| P. vanderplanki |
Pv.01302 |
| A. aegypti |
AAEL010945 |