MidgeBase gene description page [Pn.07345]
Outline
| Gene ID | Pn.07345 |
| Type | Protein coding gene |
| Scaffold | PnScaf6705 |
| Start | 12045 |
| End | 12645 |
| Direction | + |
Sequence
Transcript: 531 (bp)
ATGGTAAGACGTAAAATTACTTTGCAAAAAGCATTGGACGAGAGTGATGTGAGCTCAGATGGAAACGAACATGCAGGTTCGTCTACAAGAAAGGGAAAAAGCGCTAAAAAAAATCAACCATCAACTTCTAAGCAACAAAAAAACCAAACATCTACCTTTCAACAGCACCGCCAGAACCAACAGCCGAGTCACTCGCAAAATCGACCGCAGAGAGCAGAAGAAATTGTCAGCAGACGAAAAGACAAATTTCCGAAGCATATTAAAGAAATCATACGACTACAAAACTCGACCGAATTGCTAATATCCAAGGCTCCGTTTGCTAGACTTGTAAAAGAAATTATGCAGCGACATGGCGATTTACGGATGCAGTCCATCGCACTAGCTACAATTCAGGAGGCAACTGAGATTTATTTAGTTCAGTTGTTGGAGGACGCTTACAAACTTACTCTTCATCGGCACAGAATAACCCTTCATCCCTCAGACGTTACGCTCGTTCTGTATTTGCGTGGTCAGAACGATCCTGGAAACAAA
Protein: 177 (aa)
MVRRKITLQKALDESDVSSDGNEHAGSSTRKGKSAKKNQPSTSKQQKNQTSTFQQHRQNQQPSHSQNRPQRAEEIVSRRKDKFPKHIKEIIRLQNSTELLISKAPFARLVKEIMQRHGDLRMQSIALATIQEATEIYLVQLLEDAYKLTLHRHRITLHPSDVTLVLYLRGQNDPGNK
| Type | Start | End | Length |
| CDS |
12045 |
12088 |
44 |
| CDS |
12156 |
12642 |
487 |
| intron |
12089 |
12155 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850347 |
histone H3.3 type 2 [Culex quinquefasciatus] gb|EDS31904.1| histone H3.3 type 2 [Culex quinquefasciatus] |
1e-19 |
| InterPro |
IPR007900 |
Transcription initiation factor TFIID component TAF4 |
|
| InterPro |
IPR000164 |
Histone H3 |
|
| InterPro |
IPR009072 |
Histone-fold |
|
| InterPro |
IPR007125 |
Histone core |
|
| Gene Ontology(BP) |
GO:0006334 |
nucleosome assembly |
|
| Gene Ontology(BP) |
GO:0006352 |
transcription initiation, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005669 |
transcription factor TFIID complex |
|
| Gene Ontology(CC) |
GO:0000786 |
nucleosome |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF00125.19 |
Core histone H2A/H2B/H3/H4 |
3e-19 |
| Pfam |
PF12444.3 |
Sox developmental protein N terminal |
1.6 |
| Pfam |
PF00808.18 |
Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
2.6e-07 |
| Pfam |
PF03276.9 |
Spumavirus gag protein |
8.2 |
| Pfam |
PF09531.5 |
Nucleoporin protein Ndc1-Nup |
1.8 |
| Pfam |
PF09580.5 |
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) |
4.3 |
| Pfam |
PF13203.1 |
Putative metallopeptidase domain |
0.42 |
| Pfam |
PF05236.9 |
Transcription initiation factor TFIID component TAF4 family |
6.9e-05 |
| Pfam |
PF04695.8 |
Peroxisomal membrane anchor protein (Pex14p) conserved region |
0.027 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04018 |