MidgeBase gene description page [Pn.07328]
Outline
| Gene ID | Pn.07328 |
| Type | Protein coding gene |
| Scaffold | PnScaf6690 |
| Start | 18597 |
| End | 20088 |
| Direction | - |
Sequence
Transcript: 1389 (bp)
ATGGGAAAGGAGAAGACTCATATTAACATCGTCGTCATTGGACATGTCGATTCAGGCAAGTCAACAACTACCGGTCACTTGATCTACAAATGCGGTGGTATTGACAAGCGTACGATCGAGAAATTCGAAAAGGAAGCACAGGAAATGGGTAAAGGCTCATTCAAGTACGCATGGGTTTTGGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATTGCCTTGTGGAAGTTCGAGACTGCTAAGTACTACGTCACCATCATTGATGCCCCTGGCCATCGTGATTTCATCAAGAACATGATCACGGGAACATCGCAGGCTGATTGCGCTGTCTTGATTGTCGCCGCCGGTACTGGTGAGTTCGAAGCCGGTATCTCCAAGAACGGTCAAACTCGCGAGCACGCTTTGTTGGCCTTCACATTGGGTGTCAAGCAATTGATTGTTGGCGTCAACAAAATGGACTCGACCGAACCACCATACAATGAAGCTCGTTTCGAGGAAATCAAGAAGGAAGTCTCATCGTACATCAAGAAGATCGGTTACAATCCAGCTGCCGTCGCTTTCGTTCCAATCTCAGGCTGGCATGGCGACAACATGTTGGAACCATCAACCAAGATGCCATGGTTCAAGGGATGGGCTATTGAACGCAAAGAGGGCAAGGCCGACGGAAAATGCCTGATTGATGCTTTGGACGCAATCTTGCCACCACAACGTCCAACTGACAAGCCATTGCGCTTGCCTCTCCAGGACGTCTACAAGATCGGTGGTATTGGAACAGTACCCGTCGGTCGTGTTGAGACTGGTGTCTTGAAGCCAGGTATGGTTGTTGTTTTTGCTCCAGTCAACTTGACAACTGAAGTTAAGTCAGTCGAAATGCATCACGAAGCCCTTCAAGAAGCCGTGCCCGGTGACAACGTTGGTTTCAACGTTAAGAACGTCTCAGTCAAGGAGTTGCGTCGTGGTTATGTTGCTGGTGACAGCAAGAGCAACCCACCACGTGGTGCTGCCGATTTCACCGCTCAAGTCATCGTCTTGAACCATCCAGGTCAAATTTCAAATGGATACACCCCCGTCTTGGATTGTCACACCGCTCACATTGCCTGCAAGTTCTCAGAAATCAAGGAGAAGGTCGATCGTCGTTCGGGTAAATCAGTTGAGGACAATCCAAAGGCCATCAAGTCGGGAGATGCCGCCATCGTCATCTTGATCCCAACGAAGCCACTGTGCGTTGAATCATTCCAGGAATTCCCACCGTTGGGTCGTTTCGCCGTTCGTGATATGAGACAAACTGTTGCCGTCGGTGTCATCAAGGCCGTCTCATTCAAGGATGCTTCGGGTGGTAAGACTACCAAGGCAGCCGAAAAGGCCCAAAAGGCCAAGAAA
Protein: 463 (aa)
MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYNEARFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWAIERKEGKADGKCLIDALDAILPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPVNLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKSNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFSEIKEKVDRRSGKSVEDNPKAIKSGDAAIVILIPTKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVSFKDASGGKTTKAAEKAQKAKK
| Type | Start | End | Length |
| CDS |
18600 |
19165 |
566 |
| CDS |
19266 |
20088 |
823 |
| intron |
19166 |
19265 |
100 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
BAH28891 |
elongation factor 1-alpha [Polypedilum vanderplanki] |
0.0 |
| InterPro |
IPR004160 |
Translation elongation factor EFTu/EF1A, C-terminal |
|
| InterPro |
IPR004161 |
Translation elongation factor EFTu/EF1A, domain 2 |
|
| InterPro |
IPR009001 |
Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal |
|
| InterPro |
IPR000795 |
Protein synthesis factor, GTP-binding |
|
| InterPro |
IPR009000 |
Translation elongation/initiation factor/Ribosomal, beta-barrel |
|
| InterPro |
IPR004539 |
Translation elongation factor EF1A, eukaryotic/archaeal |
|
| Gene Ontology(BP) |
GO:0006414 |
translational elongation |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0003746 |
translation elongation factor activity |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF03144.20 |
Elongation factor Tu domain 2 |
5.7e-18 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
2.5e-56 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.0028 |
| Pfam |
PF04670.7 |
Gtr1/RagA G protein conserved region |
0.012 |
| Pfam |
PF00350.18 |
Dynamin family |
0.045 |
| Pfam |
PF02774.13 |
Semialdehyde dehydrogenase, dimerisation domain |
0.1 |
| Pfam |
PF03143.12 |
Elongation factor Tu C-terminal domain |
1.1e-33 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC001880 |
| H. sapiens |
ENSP00000330054 |
| A. gambiae |
AGAP007406 |
| P. humanus |
PHUM075480-PA |
| N. vitripennis |
NV13182-PA |
| D. melanogaster |
FBgn0000557 |
| A. mellifera |
GB10560-PA |
| M. musculus |
ENSMUSG00000016349 |
| A. aegypti |
AAEL017096 |
| T. castaneum |
TC010452 |
| P. vanderplanki |
Pv.02502 |
| A. mellifera |
GB16844-PA |
| H. sapiens |
ENSP00000298049 |
| B. mori |
BGIBMGA003608-TA |
| H. melpomene |
HMEL004066-PA |
| H. sapiens |
ENSP00000217182 |
| N. vitripennis |
NV16035-PA |
| M. musculus |
ENSMUSG00000037742 |
| A. aegypti |
AAEL017301 |
| B. mori |
BGIBMGA007516-TA |
| A. gambiae |
AGAP003541 |
| P. vanderplanki |
Pv.01492 |
| D. plexippus |
DPOGS215734PA |
| S. invicta |
SI2.2.0_00446 |
| C. quinquefasciatus |
CPIJ009655 |
| H. melpomene |
HMEL015169-PA |
| N. vitripennis |
NV13182-PB |
| D. plexippus |
DPOGS204239PA |
| H. sapiens |
ENSP00000339063 |
| H. sapiens |
ENSP00000339053 |
| D. melanogaster |
FBgn0000556 |
| C. quinquefasciatus |
CPIJ009303 |