MidgeBase gene description page [Pn.07323]
Outline
| Gene ID | Pn.07323 |
| Type | Protein coding gene |
| Scaffold | PnScaf6690 |
| Start | 508 |
| End | 4518 |
| Direction | + |
Sequence
Transcript: 2688 (bp)
ATGTTTAGCGCCATAAAAAATTTATTAACGGGCGATATATCACCGAATAAAGTCATCGAGAAATCATTGGATTCCATCGCGAGTCATAATGTTTTGCAGCGAGACGACTGCATGCTTCTCTTTGCCCCTCAAATAGCCGACACAACAACATCCACGCCATCAAATAAGAGCAAAAAATTTTACGAAATTATTCTCTACCGCCCTGCTTCGGAATCAGTCAACTCATCTTACAGCTTATTTCGAGCGGAAACACAAGAAGAGGCACTAGCCCGGTTTGAAGCGTATACTCATCGCGTGCCCAACTTCGTGACGATGGTCAGCCAATATTACAATATACCAGGACTGCAAAAAATCTGCGACCTCCTCACAGAAAATCCATCATGGTCTATCGCACACTTAGTAGCATATTTAAATCTCGTTGAGTACCTTTCGAATCCTGCAGTCGTTGAGCTTCTCGACTATCCAGACCATGTCAAGTATATGACGCCCCTGCAAGTCGCCATCAAGGCGAAGAATATTGAGATGGTTAAGGCGCTGTTGAATGTTGCAAAACTCGACCATTTGGATTATAACAGCAATTCGATTTTCCATTATGCAGCAAATACGAGTCGGGAAATGATTGTTATCTTGACAAATAAGAGCGTCGTAAACTTGAATCACATCAATCTCGAGGGAGTTACTCCACTGCACCACGCCTGTCTCAGCAATAATCCCGACTGTGTGAATGCACTCTTATGTGCCGGAGCCGATGTCAATATCTCTGCAAAGCATGTGAATGGCAACAAAGTACAAAACAGAAACTTGTCGTCGAACAGCACGAGTCCTGGTTCGTCGTCGTCGCCGGGAACAGTCGCAGAGTTCTTTCAAAACAATGCCAACAAGCTTTGCACTCAACAAATGAAAAACGGCGGCACTCCACTTCATTGGTGTAGTTCGAGAGAAGTCTTGGAATCTTTAATCGAGAGAGGATGTTACATTAACTCATTAGATTTTAACGGGCGTTCGGCTTTACATGTAATGGTGGAGAAGAATCAACTGGATTGTGTCGTCTCACTGCTAGCACATGACGCAGAAATTGATCTAAAAGATAAGGATGGCAACACGCCGCTACACATTGCTGTCGAGAAGAAATTAATTCCAATCGTCCAATGCTTGGTGGTGTTCGGATGTGACATCAATATGAAAAACAAAAATGACCAAACACCGAGGCATATGGTGGGCAAGGAGGCATCAGGTTCGAACGACGACATGATTCTTTACATTCTTCACTCAGTGGGAGCAAAGAGATGTCCCGAAATTTATTCTCGCTGTCCGCCCGGATGCAATTTTAAGGGGACGTATAACGGGATCCCACCAGCACAACCCGAAACAACCGAGCAAAGAGAAGCCATTCAACAAGTATTGGCAGCGACCACGTCACATCTCCTCAGAGGAAGAAATAGCGTCCCAAATATTACGAATCAACAGCTCTTCCGTTTACCCAAAGATCAACCCGTTTTAATAGACACCACAGCTGAGCAGAAAGGCGCAAGTGTAATGGATGCTCTACTCGGAATGTTTACATCAAAAATTCAAGCGGCTGCCAAAAAGGAGGTTCCATTGTGCGACAAAGGAACGTCAACTGCGGAAGATGAAAACGAAGAAGTCATGGACGAGGACCACGAAGCGAGTGTCAGCGAAGAGAACTCGTCTTATTCCAACGGTAGAGGACGGTTGTTGTGTCTTGATGGAGGTGGAATCAGGGGATTAGTCTTAGTTCAAATGCTACTTGAAATAGAGCAACTTTCTCAGACACCGATACATTTCCTTTTCGACTGGGTAGCAGGCACATCAACAGGAGGAATACTAGCACTCGGAATTGGCTCAGGAAAAACAATGAAGCAGTGCATGTGCTTGTACTTGAAAATGAAAAATTTGGCTTTCAATGGAAGTCGTCCGTATGCGAGCGACCCACTTGAGAACGTGCTCAAGGAAAATTTAGGAGAGTACACAGTGATGTCGGAAATTAAGCATCCAAAGATAATGGTGAGTGCAGTTATGGCCGATAGAAAACCGGTCGACTTGCACTTTTTCAGGAACTATAAAACTGCATCTGACATTTTGAATATCACTACGCCATCGACTAACCGACGCATTCCTCCACCGACACCAGAAAATCAACTCATTTGGCGTGCTGCACGAGCAACGGGAGCCGCTCCGTCATATTTTAGAGCTTTTGGTCGTTTCCTAGACGGCGGTCTGATTGCTAATAATCCAACGCTAGACGCTATGACAGAAATTCATGAATACAACATGGCTTTGCACTCTATAAATCGAAAGAATGAAGCGGTTCCCTTGTCAATAGTTGTTTCCCTAGGCACTGGCTTGCCACCGGTAACTGAATTGAAGGACATTGATGTTTTCCGACCAGACAGCATCTGGGATACTGCAAAACTAGCTTATGGAATTTCCGCGATCGGCAATTTACTAGTCGATCAAGCGACATTAGCTGATGGGCGTGTTGTTGATCGAGCTCGAGCATGGTGCAGTATGATTGGAGTGCCATATTTCCGCTTCAATCCACAAATGTCTGTGGATCTTGCTATGGATGAAAAAATGGATGCTCCACTTATTAACATGATGTGGGAAACCAAAGCGTACATGTATCAGAACAGAAACAAAGTTATCGAAATGGTTAACTTATTGAAG
Protein: 896 (aa)
MFSAIKNLLTGDISPNKVIEKSLDSIASHNVLQRDDCMLLFAPQIADTTTSTPSNKSKKFYEIILYRPASESVNSSYSLFRAETQEEALARFEAYTHRVPNFVTMVSQYYNIPGLQKICDLLTENPSWSIAHLVAYLNLVEYLSNPAVVELLDYPDHVKYMTPLQVAIKAKNIEMVKALLNVAKLDHLDYNSNSIFHYAANTSREMIVILTNKSVVNLNHINLEGVTPLHHACLSNNPDCVNALLCAGADVNISAKHVNGNKVQNRNLSSNSTSPGSSSSPGTVAEFFQNNANKLCTQQMKNGGTPLHWCSSREVLESLIERGCYINSLDFNGRSALHVMVEKNQLDCVVSLLAHDAEIDLKDKDGNTPLHIAVEKKLIPIVQCLVVFGCDINMKNKNDQTPRHMVGKEASGSNDDMILYILHSVGAKRCPEIYSRCPPGCNFKGTYNGIPPAQPETTEQREAIQQVLAATTSHLLRGRNSVPNITNQQLFRLPKDQPVLIDTTAEQKGASVMDALLGMFTSKIQAAAKKEVPLCDKGTSTAEDENEEVMDEDHEASVSEENSSYSNGRGRLLCLDGGGIRGLVLVQMLLEIEQLSQTPIHFLFDWVAGTSTGGILALGIGSGKTMKQCMCLYLKMKNLAFNGSRPYASDPLENVLKENLGEYTVMSEIKHPKIMVSAVMADRKPVDLHFFRNYKTASDILNITTPSTNRRIPPPTPENQLIWRAARATGAAPSYFRAFGRFLDGGLIANNPTLDAMTEIHEYNMALHSINRKNEAVPLSIVVSLGTGLPPVTELKDIDVFRPDSIWDTAKLAYGISAIGNLLVDQATLADGRVVDRARAWCSMIGVPYFRFNPQMSVDLAMDEKMDAPLINMMWETKAYMYQNRNKVIEMVNLLK
| Type | Start | End | Length |
| CDS |
508 |
517 |
10 |
| CDS |
948 |
1170 |
223 |
| CDS |
1310 |
1896 |
587 |
| CDS |
1957 |
2401 |
445 |
| CDS |
2469 |
3000 |
532 |
| CDS |
3082 |
3238 |
157 |
| CDS |
3303 |
3470 |
168 |
| CDS |
3536 |
3565 |
30 |
| CDS |
3643 |
3735 |
93 |
| CDS |
3804 |
3904 |
101 |
| CDS |
3964 |
4105 |
142 |
| CDS |
4166 |
4209 |
44 |
| CDS |
4276 |
4350 |
75 |
| CDS |
4435 |
4515 |
81 |
| intron |
518 |
947 |
430 |
| intron |
1171 |
1309 |
139 |
| intron |
1897 |
1956 |
60 |
| intron |
2402 |
2468 |
67 |
| intron |
3001 |
3081 |
81 |
| intron |
3239 |
3302 |
64 |
| intron |
3471 |
3535 |
65 |
| intron |
3566 |
3642 |
77 |
| intron |
3736 |
3803 |
68 |
| intron |
3905 |
3963 |
59 |
| intron |
4106 |
4165 |
60 |
| intron |
4210 |
4275 |
66 |
| intron |
4351 |
4434 |
84 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_317997 |
AGAP004812-PA [Anopheles gambiae str. PEST] gb|EAA13225.3| AGAP004812-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR016035 |
Acyl transferase/acyl hydrolase/lysophospholipase |
|
| InterPro |
IPR020683 |
Ankyrin repeat-containing domain |
|
| InterPro |
IPR002641 |
Patatin/Phospholipase A2-related |
|
| InterPro |
IPR002110 |
Ankyrin repeat |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF12796.2 |
Ankyrin repeats (3 copies) |
1.6e-32 |
| Pfam |
PF13857.1 |
Ankyrin repeats (many copies) |
1.8e-24 |
| Pfam |
PF05669.7 |
SOH1 |
0.021 |
| Pfam |
PF13606.1 |
Ankyrin repeat |
1.5e-23 |
| Pfam |
PF13637.1 |
Ankyrin repeats (many copies) |
2.8e-23 |
| Pfam |
PF00023.25 |
Ankyrin repeat |
6.2e-30 |
| Pfam |
PF01734.17 |
Patatin-like phospholipase |
1.2e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM565780-PA |
| A. gambiae |
AGAP004812 |
| A. mellifera |
GB19826-PA |
| P. vanderplanki |
Pv.06209 |
| B. mori |
BGIBMGA011625-TA |
| C. quinquefasciatus |
CPIJ007422 |
| H. sapiens |
ENSP00000386100 |
| D. melanogaster |
FBgn0036053 |
| M. musculus |
ENSMUSG00000042632 |
| T. castaneum |
TC003390 |
| N. vitripennis |
NV11922-PA |
| H. sapiens |
ENSP00000333142 |
| N. vitripennis |
NV11923-PA |
| H. sapiens |
ENSP00000335149 |
| S. invicta |
SI2.2.0_11178 |
| D. plexippus |
DPOGS201937PA |
| A. aegypti |
AAEL012835 |
| H. melpomene |
HMEL002313-PA |
| H. sapiens |
ENSP00000412061 |