MidgeBase gene description page [Pn.07278]
Outline
| Gene ID | Pn.07278 |
| Type | Protein coding gene |
| Scaffold | PnScaf6630 |
| Start | 31680 |
| End | 33550 |
| Direction | - |
Sequence
Transcript: 1116 (bp)
ATGTCATCAGCGCTAAGAATGAAGCCTTTTGGCAGCAAAAAGGATAAGAAAAATCCGCCGATCCTGAGCCACGAATTTGTTATTCAGAATCATGCAGATATTGTTTCGTGCATCGCGATGGTTTTCGTCGTCGGTTTGATGATGCAAGCAACCAGCACATTAGCTAGCATTTTTATTGTAATGGGCCACAACGTGACTGATCCGACCGATGCGGCAACTAGAAATGAGCCATTCCTATACGAATCAGGTTGGAGAGACGGCCCCGCTGTTTTCTTCTATACTCTCATCTGCATCATCATGCATGCAATCTTGCAGGAGTATGTCCTAGATAAAGTTTCAAAGAAACTTCACCTCTCGAAATTCAAGCTCTCCCGATTCAACGAGTCGGGTCAGCTGGTGGTCTTTTACCTGATGTCATTTTTGTGGGGCGCCGAGGTCATCATCCGCGAGCAATATGCCGAGAACATGTCGAAGCTCTGGACCGACTATCCCAACCACCCGATGACCTTCCTGCACAAGCTCTACTTCATCATTCAGCTCGCCTACTACCTTCACATGCTGCCCGAGCTCTACTTCCAGAAGATCAAGAAGGACGAGCAGCCGCCTAAAATGCAACATTCCATTGCCGGAACGGCCATCATCGGCTTCTTCTACTTCTTCGGCTACCGTCGCATCGCCATCGTTCTGTTGACGCTTCACTACTTCAGCGAGTTTGTTGCGCACACTTTTGGACTGCTCGAGGTCTTCGACAAGGAAGAGAAATACGCCAAATTCCGCGTCTTCAACAACATCATCTTCCTCCTCACTGCGTTCTCAACACTCGTCCTCTCATTCCTCACGTTCTTCACCGGAATCGGAAAGCTCAATCCGACGCGCGGCATGCTCGGCCTCCTCATTGCCTTCTCCATCCAGGGATTCCTCATTTTCCGCTTCATCACCTCCTTCCTCAAGTCGAAGCGCGAATCGAAGGAGCAGGTTGTCGTCAAGCAGCCGCTGACGAAGAAGTCAAAGCCCAGCACCGAGACGAAGAAGGAGTCGAGTAAAAAGGACCGCAAGAAGGAGTCGGACTTGCCCGAAGCCGACCAAAATGTGAGCCAGAAGAAGGTCAAGACCAAG
Protein: 372 (aa)
MSSALRMKPFGSKKDKKNPPILSHEFVIQNHADIVSCIAMVFVVGLMMQATSTLASIFIVMGHNVTDPTDAATRNEPFLYESGWRDGPAVFFYTLICIIMHAILQEYVLDKVSKKLHLSKFKLSRFNESGQLVVFYLMSFLWGAEVIIREQYAENMSKLWTDYPNHPMTFLHKLYFIIQLAYYLHMLPELYFQKIKKDEQPPKMQHSIAGTAIIGFFYFFGYRRIAIVLLTLHYFSEFVAHTFGLLEVFDKEEKYAKFRVFNNIIFLLTAFSTLVLSFLTFFTGIGKLNPTRGMLGLLIAFSIQGFLIFRFITSFLKSKRESKEQVVVKQPLTKKSKPSTETKKESSKKDRKKESDLPEADQNVSQKKVKTK
| Type | Start | End | Length |
| CDS |
31683 |
32026 |
344 |
| CDS |
32091 |
32532 |
442 |
| CDS |
32612 |
32720 |
109 |
| CDS |
32810 |
32883 |
74 |
| CDS |
33404 |
33550 |
147 |
| intron |
32027 |
32090 |
64 |
| intron |
32533 |
32611 |
79 |
| intron |
32721 |
32809 |
89 |
| intron |
32884 |
33403 |
520 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001844990 |
translocation associated membrane protein [Culex quinquefasciatus] gb|EDS38885.1| translocation associated membrane protein [Culex quinquefasciatus] |
1e-130 |
| InterPro |
IPR006634 |
TRAM/LAG1/CLN8 homology domain |
|
| InterPro |
IPR013599 |
TRAM1-like protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF04145.10 |
Ctr copper transporter family |
0.024 |
| Pfam |
PF13882.1 |
C-terminal domain of Fibronectin type III |
0.048 |
| Pfam |
PF08390.6 |
TRAM1-like protein |
6.7e-20 |
| Pfam |
PF06422.7 |
CDR ABC transporter |
0.054 |
| Pfam |
PF03798.11 |
TLC domain |
3.4e-17 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV10207-PA |
| A. aegypti |
AAEL003285 |
| H. sapiens |
ENSP00000428052 |
| A. gambiae |
AGAP010386 |
| M. musculus |
ENSMUSG00000025935 |
| P. humanus |
PHUM455380-PA |
| P. vanderplanki |
Pv.07580 |
| H. sapiens |
ENSP00000262213 |
| H. sapiens |
ENSP00000439359 |
| D. plexippus |
DPOGS203811PA |
| A. mellifera |
GB18898-PA |
| T. castaneum |
TC001570 |
| B. mori |
BGIBMGA003718-TA |
| D. melanogaster |
FBgn0040340 |
| C. quinquefasciatus |
CPIJ002834 |