MidgeBase gene description page [Pn.07258]
Outline
| Gene ID | Pn.07258 |
| Type | Protein coding gene |
| Scaffold | PnScaf6607 |
| Start | 1126 |
| End | 2371 |
| Direction | + |
Sequence
Transcript: 1059 (bp)
ATGTTCAAAGTGTTCAACTTTTTAGTAATTTTCTCAATTTTCTTGCTTTTTGCTGAATCTTCAGAAGTCGGTGATTTCTCAAAAACCTCAGAAAACGAAATTAAATTCCCTAAAAACGGGCAAAATGAAGCAGGTGAGTTAATCGCACAAGAAACAGACGAAAACGGCTTTCAAGAGACGGAAAGGAGGATAGCTGGTGGCGAGAGAGCTGCATTTGGTCAATTTCCCTACCACGCTCTCATTTATGCTGGCACGAGCATCGAAAACTCAATCTCCTGCGGCGGCGCTCTCATCAGAAACAATTACGTCCTCACTTCCGCAACCTGCTTGCAAAACAGAGCCGTCTTCGACATTTACCTGGGCATCATTGACAAGGCTAACGGCCCTTACACGTACCGCCATGGCCCGGTTCTGAACAGCGGTGACATCGTGATCCACCCGAGTTACGAACCTTCAACGCACAGCAACAACCTGGCCCTCATCCACCTCAGCACCTCGCCGCCGTTCCATCCAAATGTCGGCTACATCGAGCTGCCATTTTTCAGTGACGTCACAAGCAGTTTGATCGACTTGAGGGCGACTGTGACCGGTTTCGGAAATCTCAACATGACCACGTCGACCACGTTTTTGCACCACGTGGCTGCGCCAATTTCGGACAACAGAGCGTGCAGCCAAACCTACCCCGGCTTCATCACAGCTGCGAGTCTGTGCACGAACACCACTGGAGGGCGGTCGCCTTGTGGCGGCGATGCCGGAGGTCCGCTAGTGGCGGAAATCGCGCCTGGCAGGAAAGCGATAGTCGGAATTTTGAATTTTGGCGCTGAAGAGTGCACTGCCGGCTTTCCAGCCGTATTCACAAGAATCACAAGCTACCTCGACTGGCTGGCCATCTTTGTAGGCAATCCTGAACAAACAACAACAACTCCTGGAGCAAATCCTCCGACAAATACACAAACCAACCCTTCGGAAGGTCCTGCAACCACGACTCCCGGCTCGGCTTCTGTTTCGGGCTTCAGTTCTTTGCTAATTTTGACATTGGTTGCCTTAAAATTCGTCTAT
Protein: 353 (aa)
MFKVFNFLVIFSIFLLFAESSEVGDFSKTSENEIKFPKNGQNEAGELIAQETDENGFQETERRIAGGERAAFGQFPYHALIYAGTSIENSISCGGALIRNNYVLTSATCLQNRAVFDIYLGIIDKANGPYTYRHGPVLNSGDIVIHPSYEPSTHSNNLALIHLSTSPPFHPNVGYIELPFFSDVTSSLIDLRATVTGFGNLNMTTSTTFLHHVAAPISDNRACSQTYPGFITAASLCTNTTGGRSPCGGDAGGPLVAEIAPGRKAIVGILNFGAEECTAGFPAVFTRITSYLDWLAIFVGNPEQTTTTPGANPPTNTQTNPSEGPATTTPGSASVSGFSSLLILTLVALKFVY
| Type | Start | End | Length |
| CDS |
1126 |
1440 |
315 |
| CDS |
1536 |
1974 |
439 |
| CDS |
2064 |
2368 |
305 |
| intron |
1441 |
1535 |
95 |
| intron |
1975 |
2063 |
89 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACU00133 |
chymotrypsin-like protein precursor [Spodoptera litura] |
2e-34 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF09342.6 |
Domain of unknown function (DUF1986) |
0.13 |
| Pfam |
PF00089.21 |
Trypsin |
2.3e-40 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.15079 |
| Pn.04001 |
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS208017PA |
| T. castaneum |
TC009602 |
| H. melpomene |
HMEL012316-PA |
| A. aegypti |
AAEL013281 |
| H. melpomene |
HMEL012315-PA |
| S. invicta |
SI2.2.0_13908 |
| B. mori |
BGIBMGA008515-TA |
| A. aegypti |
AAEL008218 |
| D. melanogaster |
FBgn0035669 |
| H. melpomene |
HMEL002054-PA |
| P. vanderplanki |
Pv.03737 |
| B. mori |
BGIBMGA008514-TA |
| C. quinquefasciatus |
CPIJ002125 |
| D. plexippus |
DPOGS206621PA |
| C. quinquefasciatus |
CPIJ004986 |
| H. melpomene |
HMEL002054-PB |
| C. quinquefasciatus |
CPIJ004989 |
| A. gambiae |
AGAP007252 |
| H. melpomene |
HMEL012022-PA |
| H. melpomene |
HMEL012021-PA |
| H. melpomene |
HMEL003129-PA |