MidgeBase gene description page [Pn.07257]
Outline
| Gene ID | Pn.07257 |
| Type | Protein coding gene |
| Scaffold | PnScaf6604 |
| Start | 951 |
| End | 3231 |
| Direction | + |
Sequence
Transcript: 1884 (bp)
ATGATTTCATACAGAGAAAGCTACCGATGCGATCCATGTCCATCGGGTTATCATGGTCATCATACTCAAGGTATCGTGCTGCAGACTGGAATCGATCATACTTTCAAGAGACAGCGATGCGATGACATTGACGAATGCCTAGAAGGAATTGCTCGCTGTGGCACCAACTCTCAATGCGTAAACACAGACGGATCATACGAGTGTACTTGCTTGCGGGGTTTTGCTCGTAATGAGACATACGGATGTCTCCAAGTACCCGGCATGTGTCCCGATGGAACTATTTGCGACCGAAACGCAGTTTGTCAGCACGCTGGTGGGAATCGCTTTAGGTGTAAGTGCCGCATTGGATGGGCCGGTGATGGATTGTTTTGCGCAAATGACAAGGATTTAGATGGATGGCCCGACTATGATCTCGGTTGTTCGGATCCACGCTGTCGGGCAGACAATTGTCCAACCATTCCTAATTCGGGTCAAGAAGACGCAGATGGTGATGGAACAGGAGATGCTTGCGATCCCGATGCTGATAACGACGGAATCCTAAACAGCCCGGATAACTGTCCGTTAATTTACAATCCCGATCAAGCCGATACCGACGCAGATGGTGCTGATAAGCAAGGTGATGCTTGCGACAACTGCCCAACCGTTTCGAATTCTGATCAATCTGACATTGACAGGGACGGCCTAGGAGATGCATGCGATCCCGACATGGACAACGACGGCATACCAAATGAAAGAGATAATTGTCCAAAAATAGCCAACGGTAATCAGTTGGACTCAGACAACGATGGTCGTGGTGATGTCTGCGATAATTGTCCAAATGTTCCTAATCCTAGCCAGCAAGATTCTGATAACGACTTGGTAGGTGATGCCTGTGACTCAGACATTGATAGAGACAAGGACGGAGTACAAGATAGCAAAGACAACTGTCCTAAGATACCGAATTCCGATCAGCTAGATCACGATGGCGATGGAAAGGGAGACGCCTGTGACCCCGATATTGACAACGATAAGGTACTCAATGAAGTGGACAATTGTCCATTTTTCTACAATCCCGACCAAATGGACTTGAACGGGGATGGCGTTGGAGATGTTTGCGAAGAAGATTTTGATGATGATAATGTTCCCAATTATTTAGACAACTGCCCGAACAATTCGAAAATACACTCGACTGACTTCAGACGATACCAAACTGTGGTTCTTGATCCAGAAGGTGAATCACAAATCGATCCCAATTGGGTTATTTACAACAAAGGTGCGGAAATCGTTCAAACCCAGAACTCGGATCCGGGCCTGGCCGTTGGCTATCATTCATTTGGTGGCGTCGATTTTGAAGGAACCTTTTTCGTTGATACCGAAATCGACGACGATTATGTTGGATTCATATTTTCGTATCAAGACAACCACAAGTTCTATACTGTAATGTGGAAGAAAAATCATCAAACGTACTGGCAAGCTACGCCATTTAGAGCATCGGCAGAGCCGGGTATACAACTCAAACTGGTTAATAGTAAGACTGGGCCGGGAGAAATGCTGAGAAACAGTTTGTGGCATACAGGCGACACGAAAGACCAAGTCAAATTGCTTTGGAAAGATCCTAGGAATGTCGGATGGAAAGAGAGAACTGCTTATCGCTGGTTATTGCTACATCGTCCTAAAATTGGACTGATTCGTCTTAGAATTTTTGATGGGGAGAATATGGTTGCCGACTCTGGAAATATTTACGACTCAACTCTTAAAGGTGGGCGACTTGGCGTATTTTGTTTCTCGCAGGAAATGATAATTTGGTCAGACTTAGTGTATCGCTGCAACGATAATGTTCCTGAAACAATCTTCCGTGAATTGCCTCCGCGACTACAGAAAGAAGTAAAAATCGACTACAGAATA
Protein: 628 (aa)
MISYRESYRCDPCPSGYHGHHTQGIVLQTGIDHTFKRQRCDDIDECLEGIARCGTNSQCVNTDGSYECTCLRGFARNETYGCLQVPGMCPDGTICDRNAVCQHAGGNRFRCKCRIGWAGDGLFCANDKDLDGWPDYDLGCSDPRCRADNCPTIPNSGQEDADGDGTGDACDPDADNDGILNSPDNCPLIYNPDQADTDADGADKQGDACDNCPTVSNSDQSDIDRDGLGDACDPDMDNDGIPNERDNCPKIANGNQLDSDNDGRGDVCDNCPNVPNPSQQDSDNDLVGDACDSDIDRDKDGVQDSKDNCPKIPNSDQLDHDGDGKGDACDPDIDNDKVLNEVDNCPFFYNPDQMDLNGDGVGDVCEEDFDDDNVPNYLDNCPNNSKIHSTDFRRYQTVVLDPEGESQIDPNWVIYNKGAEIVQTQNSDPGLAVGYHSFGGVDFEGTFFVDTEIDDDYVGFIFSYQDNHKFYTVMWKKNHQTYWQATPFRASAEPGIQLKLVNSKTGPGEMLRNSLWHTGDTKDQVKLLWKDPRNVGWKERTAYRWLLLHRPKIGLIRLRIFDGENMVADSGNIYDSTLKGGRLGVFCFSQEMIIWSDLVYRCNDNVPETIFRELPPRLQKEVKIDYRI
| Type | Start | End | Length |
| CDS |
951 |
975 |
25 |
| CDS |
1054 |
1357 |
304 |
| CDS |
1421 |
1560 |
140 |
| CDS |
1625 |
1704 |
80 |
| CDS |
1762 |
1914 |
153 |
| CDS |
1989 |
3096 |
1108 |
| CDS |
3155 |
3228 |
74 |
| intron |
976 |
1053 |
78 |
| intron |
1358 |
1420 |
63 |
| intron |
1561 |
1624 |
64 |
| intron |
1705 |
1761 |
57 |
| intron |
1915 |
1988 |
74 |
| intron |
3097 |
3154 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001658858 |
thrombospondin [Aedes aegypti] gb|EAT40172.1| thrombospondin [Aedes aegypti] |
0.0 |
| InterPro |
IPR001881 |
EGF-like calcium-binding |
|
| InterPro |
IPR000742 |
Epidermal growth factor-like domain |
|
| InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
|
| InterPro |
IPR013032 |
EGF-like, conserved site |
|
| InterPro |
IPR000152 |
EGF-type aspartate/asparagine hydroxylation site |
|
| InterPro |
IPR018097 |
EGF-like calcium-binding, conserved site |
|
| InterPro |
IPR006210 |
Epidermal growth factor-like |
|
| InterPro |
IPR008859 |
Thrombospondin, C-terminal |
|
| InterPro |
IPR017897 |
Thrombospondin, type 3 repeat |
|
| InterPro |
IPR008985 |
Concanavalin A-like lectin/glucanase |
|
| InterPro |
IPR003367 |
Thrombospondin, type 3-like repeat |
|
| Gene Ontology(BP) |
GO:0007155 |
cell adhesion |
|
| Gene Ontology(CC) |
GO:0005576 |
extracellular region |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Pfam |
PF12946.2 |
MSP1 EGF domain 1 |
6.2e-05 |
| Pfam |
PF12662.2 |
Complement Clr-like EGF-like |
1.1e-05 |
| Pfam |
PF00008.22 |
EGF-like domain |
7.2e-05 |
| Pfam |
PF02412.13 |
Thrombospondin type 3 repeat |
2.2e-64 |
| Pfam |
PF12947.2 |
EGF domain |
9.5e-08 |
| Pfam |
PF12661.2 |
Human growth factor-like EGF |
0.69 |
| Pfam |
PF05735.7 |
Thrombospondin C-terminal region |
8.7e-111 |
| Pfam |
PF07645.10 |
Calcium-binding EGF domain |
2.5e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.05895 |
| Pn.07271 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.11089 |
| P. humanus |
PHUM370970-PA |
| C. quinquefasciatus |
CPIJ011343 |
| A. aegypti |
AAEL008062 |
| H. sapiens |
ENSP00000439156 |
| H. sapiens |
ENSP00000357362 |
| H. sapiens |
ENSP00000355751 |
| D. plexippus |
DPOGS210481PA |
| H. sapiens |
ENSP00000444792 |
| H. sapiens |
ENSP00000422298 |
| A. aegypti |
AAEL007455 |
| H. melpomene |
HMEL009724-PA |
| H. sapiens |
ENSP00000222271 |
| C. quinquefasciatus |
CPIJ016496 |
| S. invicta |
SI2.2.0_80288 |
| H. sapiens |
ENSP00000392207 |
| H. sapiens |
ENSP00000437353 |
| N. vitripennis |
NV16059-PA |
| M. musculus |
ENSMUSG00000031849 |
| A. gambiae |
AGAP002157 |
| M. musculus |
ENSMUSG00000021702 |
| B. mori |
BGIBMGA001836-TA |
| M. musculus |
ENSMUSG00000023885 |
| C. quinquefasciatus |
CPIJ016495 |
| C. quinquefasciatus |
CPIJ016498 |
| D. melanogaster |
FBgn0031850 |
| T. castaneum |
TC008608 |
| H. sapiens |
ENSP00000339730 |
| M. musculus |
ENSMUSG00000040152 |
| A. mellifera |
GB13833-PA |
| C. quinquefasciatus |
CPIJ016497 |
| H. sapiens |
ENSP00000404040 |
| P. vanderplanki |
Pv.04547 |
| H. sapiens |
ENSP00000260356 |
| H. sapiens |
ENSP00000403792 |
| C. quinquefasciatus |
CPIJ009462 |