MidgeBase gene description page [Pn.07254]
Outline
| Gene ID | Pn.07254 |
| Type | Protein coding gene |
| Scaffold | PnScaf6598 |
| Start | 10853 |
| End | 13498 |
| Direction | + |
Sequence
Transcript: 2151 (bp)
ATGAGAAGACTTGTTTTACTTTGCGGGCTTGTGCTCGCTATTAGCACAATTGCCCTTTCAATTGAAGAGGAGCACTTCGTTGGAGAAGAGCAGAGCTTCGTTGGAGAAGAGGAGAGCTTTCTGGGAGAGGAGGAAGAAATGCAATGGAGAAGTGAAGCAGAAATTGAGGAAGAATTGCAAAAGCGGGCTAATGAGGGAGAGGATAAGGCAGTAGAGGTGGAAGATGAAACTCTAAATAGAGGTCGATGCATTCCGCCAACCTACTGGGACCCAATTTCGCGAAAATGCATCTGCGACCCAAGAATCTACTGCGCATCTCGACTTCACACATTAAATCCAAAGACGTGCAGTTGTGACTGCACCTGGATGCCGATTTGCGGAATCAACCAATATGTTGACCTAAAAACTTGCAAGTGTCGGTGCAACAATGAATGTGCTGGATGCGTTTCACCGCAGGTCTGGTCCAACTCAACTTGCGAATGCAAGTGCCCGACGGTTCAAACTTGCTTGCCGCACAGTTACTGGGACTTTGACGCATGCAGATGCCTTTGCAAAGAAAAGAACACGAGATGCTGTCCGCCCAAGATCTGGGACTCGAAGATCTGCCAGTGCAGATGCCCTATAACCCAGGTTTGTCCAGCAAACATGGCCTGGGATGTGAACACGTGCAAATGTGTGTGCAAACAGTCTGTTTCATGCAAACGTCCGTACACGTGGAACTCTGAAATATGCCAGTGCGATTGCCCCATCCGCTGCCCCCCGAATTTCTTTCTCGACCAGAAGACCTGCCAGTGCATTTGTGACAAACGACTGAGTTTCCAGTGCCAAAAACCAAATTATTGGGACGAAAAAGAATGCCGCTGCATGTGCAAATTCGGGTGCCCTCGGAACTTCATCCAAGACCCGCTCACCTGCGAGTGCAAGTGCGACGAGTCGCGCGCATTTGAGTGCGAGAGAATGTACGGTCACTGGTGGGACGACAAGGAGTGTGCGTGCAAGTGTAAGCCTCGCGAATGTCCCGAAAATTTCGTTCAAAACCCGAACAGCTGTGAGTGCGAGTGCGACAAGAAGGCCGAGGAGGCGTGCGTTAAGCCGAGTTGGTGGATTCCCGAAAAGTGCTTCTGCATGTGCGACGATTCGCAGGCCGCCGAGTGCGAAAAAATCGAAGGTCGCTGGTGGGACGACAAGGAATGCGCGTGTAAGTGCAAACCCCGTGAGTGTGACGTGAACTTGGTTCAAAATCCGAAGACTTGCGACTGCGAGTGCAACCAAGAACTGGAAAAGCAGTGCAATTATCCCAATGGCTGGATGCCCGAAGAGTGCCGCTGCAGGTGCACAGAAAAGTGCCTCGATAATGAAATTCAAGACCCATACTCTTGCGCCTGCAAGTGCAACGATAAATTGGCCAAAGAGTGCGCTGCAAAGCCCGATTTTTACTTCGACGAGAAAAGCTGCGAGTGTCTGTGCAGGCCGGTCATTTGCAACAGAGGATTCAAGCAGGATCCGAACACTTGCCAGTGCGTTTGCGACGAGACGCTGACGGGCCGCTGTATGGAACCAAAAGTGCTGAACCCGAAGAATTGCAGTTGCATCTGTCCGAGGGAATGTCCTGTGAACTACTCGCAAGATCCCGTGACTTGTGAGTGCAAAAAGTGCGACGAAAGTTTGGCCGCCACCTGCAAGTACGACAGCCTGCGCTTTTGGGTCGAAGAAAACTGCACCTGCCCGTGCAAGCCTTATGTACCGACACTGGGTCTCAAGGTTCAACTCGAGCGCAATGGCTGCCCAGTTGGCAAGGTCCAGGACCCGAGTACCTGCATGTGCATCTGCGACGACGAATTAAGAAAATTGTGCGTGGTGCCGAACTTCTACGATAGACAAAAGTGCAGATGCTACTGCTTATTCCCATGTCCTACGAACTTCGTCAACAATCCGTTTTCGTGTGCCTGTGAGTGCGATCAAGGTCTCGCCGCGAGCTGCAACCAAAAGCCGAATCACTACTGGGACCCGAACGAGTGCGCTTGCAAGTGTTCGGCTGTCCAATGTCCACCGCGCTATGTTCAGTCTAGCTACAACTGCCAGTGCGTTTGTCAGTATTTTTACAACGTTCCTTGCACCGGGGGCATCAATTCTGCAAACTGCACTTGTGTT
Protein: 717 (aa)
MRRLVLLCGLVLAISTIALSIEEEHFVGEEQSFVGEEESFLGEEEEMQWRSEAEIEEELQKRANEGEDKAVEVEDETLNRGRCIPPTYWDPISRKCICDPRIYCASRLHTLNPKTCSCDCTWMPICGINQYVDLKTCKCRCNNECAGCVSPQVWSNSTCECKCPTVQTCLPHSYWDFDACRCLCKEKNTRCCPPKIWDSKICQCRCPITQVCPANMAWDVNTCKCVCKQSVSCKRPYTWNSEICQCDCPIRCPPNFFLDQKTCQCICDKRLSFQCQKPNYWDEKECRCMCKFGCPRNFIQDPLTCECKCDESRAFECERMYGHWWDDKECACKCKPRECPENFVQNPNSCECECDKKAEEACVKPSWWIPEKCFCMCDDSQAAECEKIEGRWWDDKECACKCKPRECDVNLVQNPKTCDCECNQELEKQCNYPNGWMPEECRCRCTEKCLDNEIQDPYSCACKCNDKLAKECAAKPDFYFDEKSCECLCRPVICNRGFKQDPNTCQCVCDETLTGRCMEPKVLNPKNCSCICPRECPVNYSQDPVTCECKKCDESLAATCKYDSLRFWVEENCTCPCKPYVPTLGLKVQLERNGCPVGKVQDPSTCMCICDDELRKLCVVPNFYDRQKCRCYCLFPCPTNFVNNPFSCACECDQGLAASCNQKPNHYWDPNECACKCSAVQCPPRYVQSSYNCQCVCQYFYNVPCTGGINSANCTCV
| Type | Start | End | Length |
| CDS |
10853 |
10895 |
43 |
| CDS |
10960 |
11268 |
309 |
| CDS |
11340 |
11468 |
129 |
| CDS |
11587 |
11629 |
43 |
| CDS |
11693 |
11754 |
62 |
| CDS |
11812 |
11955 |
144 |
| CDS |
12009 |
13057 |
1049 |
| CDS |
13124 |
13495 |
372 |
| intron |
10896 |
10959 |
64 |
| intron |
11269 |
11339 |
71 |
| intron |
11469 |
11586 |
118 |
| intron |
11630 |
11692 |
63 |
| intron |
11755 |
11811 |
57 |
| intron |
11956 |
12008 |
53 |
| intron |
13058 |
13123 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAA99804 |
220 kDa silk protein [Chironomus thummi] |
3e-34 |
| InterPro |
IPR004153 |
CXCXC repeat |
|
| Pfam |
PF03128.9 |
CXCXC repeat |
0.0036 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.07253 |
| Pn.13415 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00358 |