MidgeBase gene description page [Pn.07188]
Outline
| Gene ID | Pn.07188 |
| Type | Protein coding gene |
| Scaffold | PnScaf6489 |
| Start | 79985 |
| End | 80455 |
| Direction | + |
Sequence
Transcript: 468 (bp)
ATGCCTGGCTCAACAGTCAAGGATGTCGATCAAGACAAGATCGTGCAAGGAGTTGCACTCTTCCTTAAGAAATCGGGAAAATTGAAGGTTCCAGACAACATGGACATCGTGAAAACATCAAAGTCAAAGGATTTGGGCCCAACAAACTCAGACTGGTTCTACATCCGTTGCGCTTCAATCTTGCGTCGCATGTATCATCGCGGACCAATCGGTGTCGGTGCAGTGAAGAAAATTTTCGGCAGCAGACAGCGCAACGGTGTCTGCCCATCGCACTACTGCCGTGCTGATGGTGCCGTTTCACGTCGCGCACTTCAAGCTCTTGAACACATTAAGCTCATCGAGAAGCACTCCGAGGGCGGACGCAAATTGACAGCACAGGGACAACGTGATTTGGATCGCATCGCCTCACAAATTGTTGCCACCAGTCGATCGGCCGCCAAGAAGGAAGTCCTTGCAATCGGCGACGAG
Protein: 156 (aa)
MPGSTVKDVDQDKIVQGVALFLKKSGKLKVPDNMDIVKTSKSKDLGPTNSDWFYIRCASILRRMYHRGPIGVGAVKKIFGSRQRNGVCPSHYCRADGAVSRRALQALEHIKLIEKHSEGGRKLTAQGQRDLDRIASQIVATSRSAAKKEVLAIGDE
| Type | Start | End | Length |
| CDS |
79985 |
80452 |
468 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACL37989 |
40S ribosomal protein S19 [Ochlerotatus taeniorhynchus] |
2e-62 |
| InterPro |
IPR001266 |
Ribosomal protein S19e |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF01090.14 |
Ribosomal protein S19e |
1e-54 |
| Pfam |
PF08461.5 |
Ribonuclease R winged-helix domain |
0.0021 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS206595PA |
| S. invicta |
SI2.2.0_08705 |
| S. invicta |
SI2.2.0_00470 |
| A. mellifera |
GB14089-PA |
| D. melanogaster |
FBgn0010412 |
| P. humanus |
PHUM569580-PA |
| M. musculus |
ENSMUSG00000040952 |
| A. gambiae |
AGAP010933 |
| M. musculus |
ENSMUSG00000096699 |
| P. vanderplanki |
Pv.13336 |
| C. quinquefasciatus |
CPIJ004482 |
| T. castaneum |
TC030674 |
| A. aegypti |
AAEL010756 |
| A. mellifera |
GB15483-PA |
| H. sapiens |
ENSP00000221975 |
| N. vitripennis |
NV11055-PA |