MidgeBase gene description page [Pn.07100]
Outline
| Gene ID | Pn.07100 |
| Type | Protein coding gene |
| Scaffold | PnScaf6364 |
| Start | 1650 |
| End | 4196 |
| Direction | + |
Sequence
Transcript: 1752 (bp)
ATGAATCTGAAATTATCGATATCTCTGTTAGTGCTGGTCAGTCTATGTCTGACGCAAGTAAACTGTGAGAGCGAGGCCGACGAGTTCGACGATGGCGTTACAGTAGAAGACGATGAGGAATCCGTCGCCGGTAAGAAAGAAGAAACTGAAAAAATTGAATATCAAAGCCCGTATCCGGATCCCAATAAATTTTACTTGGCCGAGCATTTCGATGACTTGAAGCGATTCCAAGATAAATGGATTAAATCGGAAGCGATGAAGGACGATACGGCAGAGGAAATTGCTAAATATGACGGAGTTTGGAACGTCGAAGCCCCTCAGCGTAGCATTTTAGACCGCGATCTCGGATTGGTTCTTAAATCGAAAGCTAAACACGCTGCCATTTCGTCACGCTTAAACAAACCATTTAAATTTACTGATAAACCGCTGATTGTGCAATACGAAGTCACATTACAAGATGGTCAAGAATGCGGTGGAAGCTACATTAAATTGCTATCATCCGGTGCTGGAACGACAGACCTTAAGAGTTTCCACGATAAAACTCCGTACACAATCATGTTCGGACCAGATAAGTGTGGAAACGACATTAAGCTACACTTTATTCTTCGTCACGTTAATCCAAAGAATGGTTCAATCGAGGAAAAGCATAGTAAGAAACCCAAAGATCGCATTGAGGAGCCGTTCAAGGACAAACAACCTCACCTCTACAAACTCGTGATTAATCCAAACAACTACTATCAGATATCCGTTGATCATAAAGTCATTAATGAAGGCCATTTACTGAAAGATCTCAGTCCTCCAATCAATCCGCCAAAGGAAATCGATGATCCCAAAGACTTCAAGCCTGAATCCTGGGACGAACGAGAGAAAATCCCGGATCCTACTTCAGTCAAGCCTGACGATTGGGATGTACCAGCACAAATTCCGGACCCAAATGCCATCAAACCCGAAAACTGGCTGGATGAAGAGGAGAAACTGATTCCAGATCCGAGTGCCAAGAAGCCAGACGATTGGGATGATGAAATTGATGGCAAATGGGAAGCACCTTTAGTTGAGAATCCTTTGTGCGAGAACAACGGTTGCGGCAAATGGGAGCAACCAATGATTGCTAATCCAGAATACAAGGGAAAATGGCGCGCACCATTGATTGACAACCCAAATTATCAGGGCAAATGGTCGCCACGAAGAATTCCTAATCCCGACTTTTTCGAGGACAACGATCCATTCGCTAGAATAACTACGATTGCTGCCGTTGGAATTGAGTTGTGGTCAATGTCCAGTGATATTCTTTTCGATAACATAGTTATAACGGACGACGAGCGTCATGCCTTAGAGTGGGCCCAACAAACATATGATCTCAAACGCAAACATTTAGATAAGCAAGCTGAATCATTCTTTCAAAAGATGAAGAAAATTGTTAATGAAAATCCTTGGGTAGTAGCGCTATTAGTTGTTGTCATAGGACTACCAGTCTCGATTATACTGTATATGCTGTGCTCTTCTTCACCAAAGAAGGTTTCTGATTCAAAAAAGACTGATGAGGTAACTGCCGATGATACTTACGATGAACCGCAAACTACAGATCGACGAAGCAAATTAGATCTAAACGAGCCAGTCGAAGATGAAGCAGCAGAGGATGAGCAAGAAGAAGAAGAAGAGATTGCTGGCAATCAAGAAGCCGACCAGGAGCCAGAAGCCGAAGAAGTGAAAGCTAGTGAACCAATTGCGCGAAAGCGAAAGACTCGAAAAGAA
Protein: 584 (aa)
MNLKLSISLLVLVSLCLTQVNCESEADEFDDGVTVEDDEESVAGKKEETEKIEYQSPYPDPNKFYLAEHFDDLKRFQDKWIKSEAMKDDTAEEIAKYDGVWNVEAPQRSILDRDLGLVLKSKAKHAAISSRLNKPFKFTDKPLIVQYEVTLQDGQECGGSYIKLLSSGAGTTDLKSFHDKTPYTIMFGPDKCGNDIKLHFILRHVNPKNGSIEEKHSKKPKDRIEEPFKDKQPHLYKLVINPNNYYQISVDHKVINEGHLLKDLSPPINPPKEIDDPKDFKPESWDEREKIPDPTSVKPDDWDVPAQIPDPNAIKPENWLDEEEKLIPDPSAKKPDDWDDEIDGKWEAPLVENPLCENNGCGKWEQPMIANPEYKGKWRAPLIDNPNYQGKWSPRRIPNPDFFEDNDPFARITTIAAVGIELWSMSSDILFDNIVITDDERHALEWAQQTYDLKRKHLDKQAESFFQKMKKIVNENPWVVALLVVVIGLPVSIILYMLCSSSPKKVSDSKKTDEVTADDTYDEPQTTDRRSKLDLNEPVEDEAAEDEQEEEEEIAGNQEADQEPEAEEVKASEPIARKRKTRKE
| Type | Start | End | Length |
| CDS |
1650 |
1766 |
117 |
| CDS |
1840 |
2179 |
340 |
| CDS |
2250 |
2801 |
552 |
| CDS |
2877 |
2976 |
100 |
| CDS |
3045 |
3180 |
136 |
| CDS |
3250 |
3390 |
141 |
| CDS |
3744 |
3872 |
129 |
| CDS |
3957 |
4193 |
237 |
| intron |
1767 |
1839 |
73 |
| intron |
2180 |
2249 |
70 |
| intron |
2802 |
2876 |
75 |
| intron |
2977 |
3044 |
68 |
| intron |
3181 |
3249 |
69 |
| intron |
3391 |
3743 |
353 |
| intron |
3873 |
3956 |
84 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001647823 |
calnexin [Aedes aegypti] gb|EAT32491.1| calnexin [Aedes aegypti] |
0.0 |
| InterPro |
IPR009033 |
Calreticulin/calnexin, P |
|
| InterPro |
IPR001580 |
Calreticulin/calnexin |
|
| InterPro |
IPR018124 |
Calreticulin/calnexin, conserved site |
|
| InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
|
| InterPro |
IPR008985 |
Concanavalin A-like lectin/glucanase |
|
| Gene Ontology(BP) |
GO:0006457 |
protein folding |
|
| Gene Ontology(CC) |
GO:0005783 |
endoplasmic reticulum |
|
| Gene Ontology(MF) |
GO:0051082 |
unfolded protein binding |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Pfam |
PF03896.11 |
Translocon-associated protein (TRAP), alpha subunit |
0.075 |
| Pfam |
PF13882.1 |
C-terminal domain of Fibronectin type III |
0.081 |
| Pfam |
PF07423.6 |
Protein of unknown function (DUF1510) |
0.082 |
| Pfam |
PF00262.13 |
Calreticulin family |
1.7e-150 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000020368 |
| H. sapiens |
ENSP00000424063 |
| A. mellifera |
GB16261-PA |
| P. humanus |
PHUM544490-PA |
| D. melanogaster |
FBgn0264077 |
| P. vanderplanki |
Pv.17065 |
| M. musculus |
ENSMUSG00000002190 |
| H. sapiens |
ENSP00000326699 |
| H. sapiens |
ENSP00000423588 |
| H. sapiens |
ENSP00000439381 |
| H. melpomene |
HMEL017722-PA |
| A. gambiae |
AGAP005032 |
| D. plexippus |
DPOGS211902PA |
| H. sapiens |
ENSP00000247461 |
| C. quinquefasciatus |
CPIJ009164 |
| D. melanogaster |
FBgn0030377 |
| B. mori |
BGIBMGA001097-TA |
| H. sapiens |
ENSP00000421107 |
| A. aegypti |
AAEL015100 |
| H. sapiens |
ENSP00000391646 |
| D. melanogaster |
FBgn0015622 |
| N. vitripennis |
NV10513-PA |
| S. invicta |
SI2.2.0_10264 |
| T. castaneum |
TC007397 |
| H. sapiens |
ENSP00000394817 |
| H. sapiens |
ENSP00000392782 |