MidgeBase gene description page [Pn.07075]
Outline
| Gene ID | Pn.07075 |
| Type | Protein coding gene |
| Scaffold | PnScaf6340 |
| Start | 25742 |
| End | 27476 |
| Direction | + |
Sequence
Transcript: 1305 (bp)
ATGTACGATGATAAGGAGGGCATAATCCCTGGAAATGCTCTCGTGGTCGACCCCAAGAAACAGTTTCGTCCACTTAGCAAGTATGGGAATGCTTTTCTTAATCGCTTTCAGTGCTCGAGTGTGAATTCGCCCGTTTTGCAGGCAATATCAATTGTCGATACGCCGGGTATTCTGAGTGGAGAGAAGCAACGCGTTGATCGCGGCTATGATTTTACGGGTGTGCTCGAGTGGTTCGCCGAACGCGTTGACCGCATCATTCTGCTCTTTGACGCTCACAAACTGGACATTTCTGACGAGTTTAGACGATCGATTGAGGCATTACGCGGACACGACGACAAAATTAGAATCGTTTTGAACAAAGCAGACATGGTCGATCATCAGCAATTGATGCGGGTCTATGGTGCGCTGATGTGGTCTTTGGGGAAAGTACTGCAAACTCCCGAAGTCGCTCGTGTTTACATCGGCTCATTCTGGGATCAACCCCTACGATATGACGTTAATCGTAGACTTTTTGAGGACGAGGAGCAGGATCTCTTTAGAGACCTGCAATCACTGCCAAGAAACGCCGCTCTGCGAAAGCTGAACGATTTGATTAAGAGAGCTCGTCTCGCAAAGGTGCATGCATACATTATTAGTGAGTTAAGAAACGAAATGCCTTCGGTTTTTGGAAAAGACAGTAAGAAGAAAGACCTCATCAAGAACATCGGCACCGTTTATGACAGACTCCAGCGCGAGCATCAAATTTCACCGGGCGACTTCCCCGACGTGAAGAAAATGCAGGAAGTGCTACAAAATCAGGACTTTTCAAAGTTCCACTCACTGAAGTTGCCCTTGCTTGAAGCTGTCGATCGGATGTTGGCCAATGACATCGCCCGGCTTATGAACTTGATTCCACAAGAAGAAGCTGAGCTCGTTTCAGAACCTTTGATCAAAGGTGGTGCCTTTCAAGGAATTGAAGATACTATTTCACCATTTGGCTACAAAAGAGGCGAGGGAATTGATGCTGGCGCTGGTGAGGTTGATTGGATTTGTAGCCGCGACAGAGCACGCACAGATCCCATTTTTGAGGGCCTCAATCCGATTGATGGAAAGATCAGCGGAGCCGCTGCAAAGAGCGAATTGATCAAATCAAAACTCCCAAATTCAGTGTTGTCCAAGATATGGAAGCTCTCGGACGTCGATTGCGACGGCTTCCTGGATATTGAAGAATTTGCGCTCGCAATGCATTTGATAAATGTCAAGATTGACGGAAACGAATTGCCGAACATCCTACCGGATCATCTAATTCCTCCATCGCACAGAGAA
Protein: 435 (aa)
MYDDKEGIIPGNALVVDPKKQFRPLSKYGNAFLNRFQCSSVNSPVLQAISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLRYDVNRRLFEDEEQDLFRDLQSLPRNAALRKLNDLIKRARLAKVHAYIISELRNEMPSVFGKDSKKKDLIKNIGTVYDRLQREHQISPGDFPDVKKMQEVLQNQDFSKFHSLKLPLLEAVDRMLANDIARLMNLIPQEEAELVSEPLIKGGAFQGIEDTISPFGYKRGEGIDAGAGEVDWICSRDRARTDPIFEGLNPIDGKISGAAAKSELIKSKLPNSVLSKIWKLSDVDCDGFLDIEEFALAMHLINVKIDGNELPNILPDHLIPPSHRE
| Type | Start | End | Length |
| CDS |
25742 |
25882 |
141 |
| CDS |
25976 |
26373 |
398 |
| CDS |
26497 |
26708 |
212 |
| CDS |
26772 |
26954 |
183 |
| CDS |
27040 |
27210 |
171 |
| CDS |
27274 |
27473 |
200 |
| intron |
25883 |
25975 |
93 |
| intron |
26374 |
26496 |
123 |
| intron |
26709 |
26771 |
63 |
| intron |
26955 |
27039 |
85 |
| intron |
27211 |
27273 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001654538 |
past-1 [Aedes aegypti] gb|EAT37607.1| past-1 [Aedes aegypti] |
0.0 |
| InterPro |
IPR018247 |
EF-Hand 1, calcium-binding site |
|
| InterPro |
IPR018249 |
EF-HAND 2 |
|
| InterPro |
IPR000261 |
EPS15 homology (EH) |
|
| InterPro |
IPR001401 |
Dynamin, GTPase domain |
|
| InterPro |
IPR011992 |
EF-hand-like domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
2.4e-05 |
| Pfam |
PF12763.2 |
Cytoskeletal-regulatory complex EF hand |
4.5e-19 |
| Pfam |
PF13499.1 |
EF-hand domain pair |
0.005 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
0.12 |
| Pfam |
PF00350.18 |
Dynamin family |
5.3e-10 |
| Pfam |
PF00036.27 |
EF hand |
4e-05 |
| Pfam |
PF13202.1 |
EF hand |
0.02 |
| Pfam |
PF13405.1 |
EF-hand domain |
0.02 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA009992-TA |
| P. humanus |
PHUM210750-PA |
| A. aegypti |
AAEL010403 |
| H. sapiens |
ENSP00000220325 |
| P. humanus |
PHUM490700-PA |
| C. quinquefasciatus |
CPIJ008639 |
| M. musculus |
ENSMUSG00000074364 |
| H. sapiens |
ENSP00000327116 |
| A. gambiae |
AGAP004593 |
| H. sapiens |
ENSP00000439036 |
| H. sapiens |
ENSP00000404944 |
| M. musculus |
ENSMUSG00000024772 |
| H. sapiens |
ENSP00000320516 |
| M. musculus |
ENSMUSG00000027293 |
| D. melanogaster |
FBgn0016693 |
| P. vanderplanki |
Pv.02130 |
| S. invicta |
SI2.2.0_15529 |
| N. vitripennis |
NV17933-PA |
| H. melpomene |
HMEL006088-PA |
| H. sapiens |
ENSP00000391429 |
| H. sapiens |
ENSP00000263277 |
| T. castaneum |
TC010765 |
| D. plexippus |
DPOGS209040PA |
| M. musculus |
ENSMUSG00000024065 |
| H. sapiens |
ENSP00000352354 |
| A. mellifera |
GB17549-PA |