MidgeBase gene description page [Pn.07043]
Outline
| Gene ID | Pn.07043 |
| Type | Protein coding gene |
| Scaffold | PnScaf6303 |
| Start | 31080 |
| End | 34186 |
| Direction | + |
Sequence
Transcript: 1944 (bp)
ATGATTTCATTACGCAGAAATTTCTTATCGAAAATCGTCTTAATCGTAATTGTGTTTATACTTTGCATCTTCTATATAAGAAGTTTAAACAACTTAAATGTAACAAATGCAGCAGAAAGGACCAAATTCTTAAATGTACCTCAGCAACAGCGTATCGTTAAGGACAATAATATCGATGAACAAATTCAGGAACCAGATAATGATGATGATATCAATAAAAAAAAAATCAACAGTTATAATAGTATAGACCTAGTCAGCTTTAACAATGAAGTTGAGAAAAGAAGCAGCAAAGAAGAGGCGGAAGAAGAAAACAAAAAAATTGTTTCCACACTTAACAAGTTTGAGCTTGAAATCCGAAGAGATTTGAATAAGCAGAAAGAAATACCGAACCTAGGCAAAGATGGCTCTATAGCACATTTGAGAGACCCTGATGACATTGCAATTGGTGAAAAGCAATTGGCGAAAATTGCACTTAACGAGGAACTCAGTAATCACATATCATATAATAGATCGATACCTGATGCTAGGCATCCCGCATGTAAAAAAAAGACTTATGCTAATGACCTACCGACTGCGAGCGTTATTATCATATTCTTCAATGAGCCATATTCTGTACTGTTGAGGACTGTTCATAGTGTCATAAATACGACGCCTGATGAGCTCTTAAAAGAAGTTATTTTGGTTGATGACGGCTCAAGTAACATAGAACTTAAGAAAAAATTAGACTACTACGTTAAAACACGATTAAGTGGAAAAGTCAAAGTTCTACGTTTAACAAACAGACTTGGATTAATTCGAGCTCGACTGGCAGGTGCGAGATTAGCTAAAGCCGATGTTCTAGTCTTTCTGGATGCTCACTGTGAATGTGTTGTTCATTGGCTTGAACCTCTCGTGCAAAGAATAAAAGAGAAACGAACAAGTGTCTTAGTACCAATAATAGATGTAATTGAAGCAAAAAATTTTTATTACTCCACAAATGGCTACGAAACATTTCAGATTGGTGGCTTTACATTAGACGGACATTTTGACTGGCACGACGTACCAGAGAGAGAAAGAGAGAGACAGAAGCGTGAGTGTACAGACGAAATTGAAATTTGTCCAACCTACAGTCCAACAATGGCTGGCGGTCTTTTTGCAATATCCCGTGATTATTTCTGGGAAATCGGAAGCTATGACGAGCAAATGGATGGTTGGGGTGGAGAAAATTTAGAAATGTCATTTCGCATTTGGATGTGTGGCGGAACCCTGGAGACAATACCTTGCAGTCGAATAGGGCATATATTCAGAGAGTTTCATCCATATAGCTTCCCAAACGACAAGGACACACACGGAATAAATACTGTTCGAATGGCAAAAGTTTGGATGGATGATTATCAAGAGCTACTTTACATGAATCGGCCCGATCTTAGAAATCATCCAGATGTCGGGGATGTGACGCATCGTAAAGTTTTAAGAGAAAAACTCAAATGCAAGTCCTTCGATTGGTACATGAAAAATATTTACCCTGAAAAATTCATTCCTACGAGAAACGTTCAAATTTATGGTCGAATATCTGCAGTTGACGACGATAGATTTTGCTTCGATGATTTGCAGCAGAATATAGATGAACCTTACAATCTCGGTGTTTATTCCTGCTACAAGCATGATATTGCACCGTCTCAGTTATTTTCGTACACACACAGCAAAGTTTTAAGAACGGAAAGAAGTTGCGCAACAATCGATGATCGGCGAACTACTAAATATATTGTAATGATTCCATGCAATAGTGATGAGGAAATAACGGATACGTGGATTATAACGAACTCGAAACAACTAAAACATGAACAATCTGGTTTATGCATAGATAGAAGAAATCTTGACAAAAATTTGTTACATGCAGCTGTTTGCGATTCTTTTTCAAAGACTCAAAAATGGGAATTCCAAAAGACAAAACGACAGAGCATA
Protein: 648 (aa)
MISLRRNFLSKIVLIVIVFILCIFYIRSLNNLNVTNAAERTKFLNVPQQQRIVKDNNIDEQIQEPDNDDDINKKKINSYNSIDLVSFNNEVEKRSSKEEAEEENKKIVSTLNKFELEIRRDLNKQKEIPNLGKDGSIAHLRDPDDIAIGEKQLAKIALNEELSNHISYNRSIPDARHPACKKKTYANDLPTASVIIIFFNEPYSVLLRTVHSVINTTPDELLKEVILVDDGSSNIELKKKLDYYVKTRLSGKVKVLRLTNRLGLIRARLAGARLAKADVLVFLDAHCECVVHWLEPLVQRIKEKRTSVLVPIIDVIEAKNFYYSTNGYETFQIGGFTLDGHFDWHDVPERERERQKRECTDEIEICPTYSPTMAGGLFAISRDYFWEIGSYDEQMDGWGGENLEMSFRIWMCGGTLETIPCSRIGHIFREFHPYSFPNDKDTHGINTVRMAKVWMDDYQELLYMNRPDLRNHPDVGDVTHRKVLREKLKCKSFDWYMKNIYPEKFIPTRNVQIYGRISAVDDDRFCFDDLQQNIDEPYNLGVYSCYKHDIAPSQLFSYTHSKVLRTERSCATIDDRRTTKYIVMIPCNSDEEITDTWIITNSKQLKHEQSGLCIDRRNLDKNLLHAAVCDSFSKTQKWEFQKTKRQSI
| Type | Start | End | Length |
| CDS |
31080 |
31861 |
782 |
| CDS |
32320 |
32533 |
214 |
| CDS |
32677 |
33060 |
384 |
| CDS |
33537 |
33883 |
347 |
| CDS |
33967 |
34183 |
217 |
| intron |
31862 |
32319 |
458 |
| intron |
32534 |
32676 |
143 |
| intron |
33061 |
33536 |
476 |
| intron |
33884 |
33966 |
83 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308833 |
AGAP006925-PA [Anopheles gambiae str. PEST] gb|EAA04096.4| AGAP006925-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR000772 |
Ricin B lectin domain |
|
| InterPro |
IPR001173 |
Glycosyl transferase, family 2 |
|
| InterPro |
IPR003859 |
Galactosyltransferase, metazoa |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0016757 |
transferase activity, transferring glycosyl groups |
|
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
1.3e-09 |
| Pfam |
PF13641.1 |
Glycosyltransferase like family 2 |
1.2e-06 |
| Pfam |
PF00535.21 |
Glycosyl transferase family 2 |
8.2e-29 |
| Pfam |
PF12097.3 |
Protein of unknown function (DUF3573) |
0.13 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
5.2e-10 |
| Pfam |
PF00652.17 |
Ricin-type beta-trefoil lectin domain |
9e-16 |
| Pfam |
PF09716.5 |
Malarial early transcribed membrane protein (ETRAMP) |
1.2 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV13109-PA |
| T. castaneum |
TC015209 |
| A. aegypti |
AAEL012823 |
| C. quinquefasciatus |
CPIJ011238 |
| N. vitripennis |
NV10856-PA |
| D. melanogaster |
FBgn0034025 |
| D. plexippus |
DPOGS211665PA |
| B. mori |
BGIBMGA001365-TA |
| S. invicta |
SI2.2.0_10003 |
| H. melpomene |
HMEL015890-PA |
| P. vanderplanki |
Pv.07297 |
| A. gambiae |
AGAP006925 |
| A. aegypti |
AAEL012972 |