MidgeBase gene description page [Pn.07002]
Outline
| Gene ID | Pn.07002 |
| Type | Protein coding gene |
| Scaffold | PnScaf6270 |
| Start | 315 |
| End | 1552 |
| Direction | - |
Sequence
Transcript: 1083 (bp)
ATGAAGATTTGGTTCGTGGCACTGCTGGCCTTGATTGCGCCCCTCTCGGTCGTTTCCGTGAAGAGATGCAGCGAAAATAAGTTCAAGGACTTTCAGCAACAATTCAACAAGACCTACGCGACCGAGGAGGAGGCGAAGCTGCGCTACGAAATTTTCCGCAACAACTCGAAGGCCATCCGCAGGCACAACAAGCTCTTCGCCGCCGGCAAGGTCAGCTTCGACATGGCCATGAACGAGTTCGGCGACTTGACCGCCGACGAGTTCGTCCGAATCATGCTCGGCTCTGACGTGCCGGTCGAAGCTGCAGCAACAACAACAACAACAACGGCGAGTGCCACAAACGCTCCTGCAGCGGCCAGCAACACCACCGACGCGGATCAGGGCCGCAATCCTGGGCGCGGAAATGCCTTCGGAAGAAGCCGACAGAAGCGACAGACGCTGCCGGCGACCGTCAACTGGGTGCAAAGTGGCTTTGTGACGCCCGTCCTCAACCAGGGCACGTGTGGCTGCTGCTACGCCTTCTCGGCGGCCGGCGCCCTCGAGGGCCAGCTGCGCAAGAAAAGCGGCCGCCTCGTGCAGCTGTCGAAGCAGAACCTCATGGACTGCGTGTACGGCGCGGCCGGCTGCAACGGCGGCTGGATGCCGACATGCTTCGACTACGTGCGCCGAAACGGCGGCATCAGCACCGAGGCCGGCTACCCGTTCACGGGCAGAGCGAGCGGCACGTGCCGCTACAACGCGCTGTACCGAGCGACGAGCGCGACCGGCTACGTCGCGGTGCCGTCGAGCGAGGCCGCGCTGCAGAACGCCGTCGCGACGGTCGGGCCGATCTCGGTGGCTATGGACGCGAGCCAGCCGTCCTTCCAGTTCTACCGCAGCGGTGTCTACAACGAGCCGCGCTGCTCGAGCACGACAGTCAACCACGGCATGCTGGCGGTGGGCTACGGCACCCTCAATGGCGTTCCCTACTGGCTGGTGAAGAACAGCTGGGGCACGACGTGGGGCGACCGCGGCTACGTGCTCATGAGCCGCAACCGAAACAACCAGTGCGCGATCGCGCTCGCCGCCTCCTATCCGCTGCTG
Protein: 361 (aa)
MKIWFVALLALIAPLSVVSVKRCSENKFKDFQQQFNKTYATEEEAKLRYEIFRNNSKAIRRHNKLFAAGKVSFDMAMNEFGDLTADEFVRIMLGSDVPVEAAATTTTTTASATNAPAAASNTTDADQGRNPGRGNAFGRSRQKRQTLPATVNWVQSGFVTPVLNQGTCGCCYAFSAAGALEGQLRKKSGRLVQLSKQNLMDCVYGAAGCNGGWMPTCFDYVRRNGGISTEAGYPFTGRASGTCRYNALYRATSATGYVAVPSSEAALQNAVATVGPISVAMDASQPSFQFYRSGVYNEPRCSSTTVNHGMLAVGYGTLNGVPYWLVKNSWGTTWGDRGYVLMSRNRNNQCAIALAASYPLL
| Type | Start | End | Length |
| CDS |
318 |
915 |
598 |
| CDS |
1010 |
1398 |
389 |
| CDS |
1457 |
1552 |
96 |
| intron |
916 |
1009 |
94 |
| intron |
1399 |
1456 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AEO34568 |
hypothetical protein [Amblyomma maculatum] |
8e-82 |
| InterPro |
IPR013201 |
Proteinase inhibitor I29, cathepsin propeptide |
|
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR025661 |
Cysteine peptidase, asparagine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| InterPro |
IPR025660 |
Cysteine peptidase, histidine active site |
|
| InterPro |
IPR000169 |
Cysteine peptidase, cysteine active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF03051.10 |
Peptidase C1-like family |
0.00049 |
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
3.8e-14 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
9.9e-76 |
| Pfam |
PF00847.15 |
AP2 domain |
0.12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes