MidgeBase gene description page [Pn.06954]
Outline
| Gene ID | Pn.06954 |
| Type | Protein coding gene |
| Scaffold | PnScaf6143 |
| Start | 10337 |
| End | 17075 |
| Direction | - |
Sequence
Transcript: 915 (bp)
ATGTATCCGTTTTCCAAGAACAAAGCGTCGTTCAGAATCGCAGACATTTTACACCACCATCAACAGCAGCAACAGCAACAGCAGCAGCAAGCGGCAGCCGACAGTCATTTACTTGCACATCATCTGATGATGAAGACAAACAGCAGCGGCGATGCTCGCTCAAGCGAATCGAACAAGAGCTCCGATAGCAAATCACAGACGAATGAGATTAAAAATGCAAATGACGTGCCGTCGTCGAAGTCACCGTCGCCCATTCCCGAGGCCTCGCCCGAGCACCACTCGCCTCTGAAGGGTGGCGCTGGCGGCAGCGGCAGCAGCAATGGCGATCTGCCGATGAAACCAACACCGATGTACTCGAATTTTCCATTACCTTTCCCCCTCGGCATCCATCCCGCTGCCTTCCATCCGGCCGCCTATCTAAATTATGCAGATGCAATACACAAAGTGTCCTCCTCACGAAACATGTGGCCCTACTTCCATCCATATGGCGGCTACTTGCTGCCGCCCTGCGGCTCCAAAAGGAAGGGCGGCCAGGTGCGTTTCACACCCCAGCAGACGCAGAACCTGGAGCGACGCTTCTCCAACCACAAGTATTTGTCTCCCGAGGACCGACGCAAGCTCGCCATGGAGCTGAGTCTGAGCGACCGGCAGGTGAAGACGTGGTTCCAGAACAGACGCGCCAAATGGCGACGGGCGAACAACGCGACGGGAACAAACGGTCACTCGAATCAGCACACAATTGCAGACAATTTATCATCGGCGTCGAGCGATGACGAAGATTTATCTCAGAAGCCACTGCAAATGTATCTTCATCATCAGCAGTATTACAAGCAGATGAAGGAATTCCAGAAGCAGCAACAACAGCACCAAAAAGACAACGATGCAAGTGATAATGATGACAACGTTGAAGTGAAC
Protein: 305 (aa)
MYPFSKNKASFRIADILHHHQQQQQQQQQQAAADSHLLAHHLMMKTNSSGDARSSESNKSSDSKSQTNEIKNANDVPSSKSPSPIPEASPEHHSPLKGGAGGSGSSNGDLPMKPTPMYSNFPLPFPLGIHPAAFHPAAYLNYADAIHKVSSSRNMWPYFHPYGGYLLPPCGSKRKGGQVRFTPQQTQNLERRFSNHKYLSPEDRRKLAMELSLSDRQVKTWFQNRRAKWRRANNATGTNGHSNQHTIADNLSSASSDDEDLSQKPLQMYLHHQQYYKQMKEFQKQQQQHQKDNDASDNDDNVEVN
| Type | Start | End | Length |
| CDS |
10340 |
10571 |
232 |
| CDS |
10637 |
10874 |
238 |
| CDS |
16631 |
17075 |
445 |
| intron |
10572 |
10636 |
65 |
| intron |
10875 |
16630 |
5756 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_321747 |
AGAP001389-PA [Anopheles gambiae str. PEST] gb|EAA01406.5| AGAP001389-PA [Anopheles gambiae str. PEST] |
2e-44 |
| InterPro |
IPR017970 |
Homeobox, conserved site |
|
| InterPro |
IPR020479 |
Homeodomain, metazoa |
|
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF11569.3 |
Homeodomain leucine-zipper encoding, Homez |
8.6e-06 |
| Pfam |
PF04502.8 |
Family of unknown function (DUF572) |
1.4 |
| Pfam |
PF05920.6 |
Homeobox KN domain |
0.009 |
| Pfam |
PF00046.24 |
Homeobox domain |
1.3e-21 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC004555 |
| D. plexippus |
DPOGS209061PA |
| A. aegypti |
AAEL004707 |
| P. vanderplanki |
Pv.11760 |
| P. vanderplanki |
Pv.15387 |
| P. vanderplanki |
Pv.12496 |
| A. gambiae |
AGAP001389 |
| B. mori |
BGIBMGA010054-TA |
| H. melpomene |
HMEL004646-PA |
| D. melanogaster |
FBgn0038852 |
| C. quinquefasciatus |
CPIJ003318 |