MidgeBase gene description page [Pn.06943]
Outline
| Gene ID | Pn.06943 |
| Type | Protein coding gene |
| Scaffold | PnScaf6132 |
| Start | 1670 |
| End | 7269 |
| Direction | + |
Sequence
Transcript: 1185 (bp)
ATGTCAAATTTTCGTTTCTTCATGTACCAAGGCAGACCTATCACACAAAAAATGGCACCGAAGCTACCGAAGCTATCAACTCAAGCGCAAAACGACGTAAACATTGCGTCGGACGACAATCACACAAAAGGCAGCCTTAATGGCACTCAAAATCATCTGAATGGCCACGAAATGGAGGAGCGCACAAGAAGCAAGCCATTTGTCCCGCAAATTCGATGGCCCGACTTTATAGTGCAATTAGCTTTGCACGTCGGCTTTCTGTACGGCCTTTACTACTTAATCGCACTGAAGGCAAAGCTCTACACTTACATCTGGTTCGTTGTGCTAGTGTACACGTCCGGGCTGGGCATTACGGCCGGCGCACATCGTCTGTGGAGTCACAGGTCGTACAAAGCGAAGCTTCCATTGCGTGTCATTCTACTGGTTTTCTTCACAATGGCCGGACAGAGAGATGCATACACATGGGCGCACGACCACCGAATCCACCACAAATATTCGGAGACTAATTCCGACCCTCACAACGCAAAGCGGGGCTTCTTCTTCGCCCACATTGGCTGGCTTTTCCTCACACCCCATCCGGACGTTGTGGAGAAACGAAAGTCGATTGACATGCGGGATTTGGAAGCGGACTCGCTGATCATGTGGCAAAAGAAATATTACCCGCTGCTGTTTGCAGCTCTAGTCATTTTCCTGCCTACTTTTGTGCCTCACTACTTCTGGAACGAAAGCCTTTGGATCTCATTTTGGACAGCTTTTGTGTGTCGCTTTGTCACCGTCCTCAACATTGCCTTCTTCGTCAACAGCGTGGCGCACATGTATGGAACGAAGCCATACGACAAGCACATCATGCCCGTCGAAAGCCTGCCCGTCGCCATCGCTGCAATGGGCGAAGGCTGGCACAACTACCACCATGTGTTTCCCTACGACTACAAGACGGGCGAATTCGGCGGCTGGCGAGGCTACCGACTCAATGTCACCACCTGCTTCATCGACCTGTTCGCAAAGCTCGGCTGGGCCTACGACAGAAAGTACGCGAGTGCCGAAATGATTGCACGGAAAATCGAGAAATCTGGCGACGGCAGTCACTTCTTGTCGCACGAGCAAGCACACAGTACCTCTCTATGGGGCTACGGCGACAACGACCTCGACCATTCCGAGAAGGAGGAGCTCAAAAGGATCAAAGAT
Protein: 395 (aa)
MSNFRFFMYQGRPITQKMAPKLPKLSTQAQNDVNIASDDNHTKGSLNGTQNHLNGHEMEERTRSKPFVPQIRWPDFIVQLALHVGFLYGLYYLIALKAKLYTYIWFVVLVYTSGLGITAGAHRLWSHRSYKAKLPLRVILLVFFTMAGQRDAYTWAHDHRIHHKYSETNSDPHNAKRGFFFAHIGWLFLTPHPDVVEKRKSIDMRDLEADSLIMWQKKYYPLLFAALVIFLPTFVPHYFWNESLWISFWTAFVCRFVTVLNIAFFVNSVAHMYGTKPYDKHIMPVESLPVAIAAMGEGWHNYHHVFPYDYKTGEFGGWRGYRLNVTTCFIDLFAKLGWAYDRKYASAEMIARKIEKSGDGSHFLSHEQAHSTSLWGYGDNDLDHSEKEELKRIKD
| Type | Start | End | Length |
| CDS |
1670 |
1704 |
35 |
| CDS |
4957 |
5237 |
281 |
| CDS |
5321 |
5451 |
131 |
| CDS |
6343 |
6419 |
77 |
| CDS |
6484 |
6612 |
129 |
| CDS |
6674 |
6912 |
239 |
| CDS |
6974 |
7266 |
293 |
| intron |
1705 |
4956 |
3252 |
| intron |
5238 |
5320 |
83 |
| intron |
5452 |
6342 |
891 |
| intron |
6420 |
6483 |
64 |
| intron |
6613 |
6673 |
61 |
| intron |
6913 |
6973 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657083 |
stearoyl-coa desaturase [Aedes aegypti] gb|EAT45076.1| stearoyl-coa desaturase [Aedes aegypti] |
1e-135 |
| InterPro |
IPR015876 |
Fatty acid desaturase, type 1, core |
|
| InterPro |
IPR005804 |
Fatty acid desaturase, type 1 |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0016717 |
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
|
| Pfam |
PF03203.9 |
MerC mercury resistance protein |
2.5 |
| Pfam |
PF04695.8 |
Peroxisomal membrane anchor protein (Pex14p) conserved region |
0.0058 |
| Pfam |
PF00487.19 |
Fatty acid desaturase |
3.6e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP003051 |
| P. vanderplanki |
Pv.02746 |
| A. aegypti |
AAEL003645 |
| A. mellifera |
GB17206-PA |
| H. melpomene |
HMEL015725-PA |
| D. melanogaster |
FBgn0039756 |
| D. plexippus |
DPOGS213661PA |
| C. quinquefasciatus |
CPIJ013752 |
| P. humanus |
PHUM128330-PA |
| T. castaneum |
TC014819 |
| B. mori |
BGIBMGA010611-TA |