MidgeBase gene description page [Pn.06884]
Outline
| Gene ID | Pn.06884 |
| Type | Protein coding gene |
| Scaffold | PnScaf6080 |
| Start | 21558 |
| End | 22542 |
| Direction | - |
Sequence
Transcript: 822 (bp)
ATGCAGAATCACATCGCAACACTGGAGGGCGAGCGTGGTTTTAGCTTCAGAAACTGCAAGAGAAACAACCAGCTCATTGCAAGCGGCTTCGTTCCGCCGAAAATGATCAAAACGGGCACCACAATTTGCGGCATCATCTACAAGGATGGCGTGATTCTGGGCTGTGACACCCGGACCACAAAAACCCCGATCATTTGCGAGAAAAAGTGCGAAAAAATCTACAAAATTCAGGAGAACATCTTTTGCGCTGGAGCCGGCTCGGCTGGCGACATGGAGGCGATGGTCAAGTGGATGAGATCGAACGCCGAAATGCACCGGCTGAACACCAACCGCAAATTCATCCCCGTCGAGTACGTGGTGACCATCACAAAGCGCTTCTTCTTCGAGCATGCCGGAAACATCTCGTGCGTCTTCATCGTCGGCGGCGTCGACTTTTCTGGACCAAAAATATACGAGATCCACAGCCATGGCTCGATAATGAGGCTTCCGTATGCGACAATGGGCTCGGGTACTTTCGCAGCGATGGCCTTCATTGAAACGCGCTGGAAACCCGACATGACTGAGGCCGAGGCGAAGGAGCTTGTGGCTGACGCCGTGACCGCCGGTGTCACCAACGATCTCGGATCGGGAACGAATGTCGACATTTGTGTCGTGAGGAAGAGCAAATCTGAGAAGCTCTGGGGCTACAGAAATATCTGCGAGAGCGGCCAAAAACTCCTCGACTACACCGTTAAGCCGGGCACGACGGCAGTTCTTTCGACGCTCGTGAAACACATTGAAATTGAAATCGTGGAAGAAAAAGTGGAAAAAATGGACTGCAAG
Protein: 274 (aa)
MQNHIATLEGERGFSFRNCKRNNQLIASGFVPPKMIKTGTTICGIIYKDGVILGCDTRTTKTPIICEKKCEKIYKIQENIFCAGAGSAGDMEAMVKWMRSNAEMHRLNTNRKFIPVEYVVTITKRFFFEHAGNISCVFIVGGVDFSGPKIYEIHSHGSIMRLPYATMGSGTFAAMAFIETRWKPDMTEAEAKELVADAVTAGVTNDLGSGTNVDICVVRKSKSEKLWGYRNICESGQKLLDYTVKPGTTAVLSTLVKHIEIEIVEEKVEKMDCK
| Type | Start | End | Length |
| CDS |
21561 |
22320 |
760 |
| CDS |
22481 |
22542 |
62 |
| intron |
22321 |
22480 |
160 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_317882 |
AGAP011423-PA [Anopheles gambiae str. PEST] gb|EAA13087.3| AGAP011423-PA [Anopheles gambiae str. PEST] |
4e-79 |
| InterPro |
IPR024689 |
Proteasome beta subunit, C-terminal |
|
| InterPro |
IPR016050 |
Proteasome, beta-type subunit, conserved site |
|
| InterPro |
IPR001353 |
Proteasome, subunit alpha/beta |
|
| InterPro |
IPR023333 |
Proteasome B-type subunit |
|
| Gene Ontology(BP) |
GO:0051603 |
proteolysis involved in cellular protein catabolic process |
|
| Gene Ontology(CC) |
GO:0005839 |
proteasome core complex |
|
| Gene Ontology(MF) |
GO:0004175 |
endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0004298 |
threonine-type endopeptidase activity |
|
| Pfam |
PF00227.21 |
Proteasome subunit |
5.4e-47 |
| Pfam |
PF12465.3 |
Proteasome beta subunits C terminal |
7.9e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.12542 |