MidgeBase gene description page [Pn.06863]
Outline
| Gene ID | Pn.06863 |
| Type | Protein coding gene |
| Scaffold | PnScaf6066 |
| Start | 39501 |
| End | 40997 |
| Direction | - |
Sequence
Transcript: 1494 (bp)
ATGAGTAATAGTGACAGTGAATTTGAGGAATTGTCCGCAGTTGTGGGTCTGCGCGTTGATAGTAACAATGAAGAGCCGAAAGATGAAGAGGCTGAAGAGTCGAAACAAATCTTGAAGAAAAAACGAAAACGCCGTGAATCTGAGAACGAAGATGAGAAAGATTTAAATGCATTCTTGTTTGGCGACAAAGAGAAGCTTGTCGAAAACCTTGAAGGGCCTAAGAAAATGTTCTTCTTGGACACTTCTGTGCACGATGATGACGGCGCTGAGGAAGAAAAGAATGAGAACTCTGCTGCATGGCACGATTCGGACGACGAGCAGTTTGAAGAAACAAGAGGAAAAACAACATCCAGAAGCAAACTAAGGAAGAAACTCAACAGAATAGGAAATGATCCTAAATGGGCTGATCTGAGCAAGCATCAGAAAGAGAGCAAACTTGGAGATTCGGATGATTCCGATGAAGATGCGATCTCAAAGACCGTCGGCTTTTTAGATAAGAAATCTATGGAGAAGCGTAAAAAGGGCTTCATACCAAAAGGCGAATTGACGTTTAAGCGACTAAAAAACTTGAATAGAATGACAGAAAATGAGGGAGTCATATCGGCAGTTGAGTTTCATCCAAAATCATTTGTTGGGCTCGTCGCCGGTCGTCGAGGATTAGTCTCACTTTTTGCTGTTGACGGCCGTGAAAATAAAAAGATTCACAACATTTGCTATGAGAAGTTCTTTATTCACTCGTGCAAACTTACAAACGACGGCGAAGAATTGATTGTCGGCGGTCAGCTGAAGGATTTTCATATTTATAATTTGATGAGCGGATATAAGCAGCGAATAAGACTGCCCAAAGGCATGAATCACTTGAAATACTTTCAGGTGAGCCCGTGCGGCAAGTACATAGCAGCCATTGGAGACTACGGCGAAGTTCATCTTATGCATGCTGTAACAAAGGAACTTTTGTTTACCTACAAGCAAGAGTACCAGAGCACTTCGTTAAACTTTTCATTAGACTCTACCGAAATATATTCGCATAGCGACGATAATGAAGTGACAATTTTCGATATCAGAACGCAGAGAGTCAAGCATCGTTTTATCGATGACGGTTGCGTAAACGGAACTGTGCTTGCCCTCAGCCCAAACGGAAAATTTTTTGCGACCGGCAGTCGACAGGGCTTTGTGAACATCTACAACCGAGAAAGCTTATTTGCCACAAAATATCCTCAACCGCTGAAAGTGATATCAAATCTCAGCACAGAAGTATCGGACCTAAAATTCAATCACACTTCAGAGCTGCTGGCAATGTGCTCAGTTGATGACAAGAATTCGATCAAAATGGCTCACGTAGAAAGCGGCTCGGTCTTTAACAACTTTCCCTCTCATTTGGACAGCATCGGACACACCAATATGCTTGCATTCTCTCCCGAGAGCGGCTATTTGGCAGTCGGCACTCTGAGTTCCAAGGTGCCGCTCTACAGATTAAGCCATTACAATAATTAT
Protein: 498 (aa)
MSNSDSEFEELSAVVGLRVDSNNEEPKDEEAEESKQILKKKRKRRESENEDEKDLNAFLFGDKEKLVENLEGPKKMFFLDTSVHDDDGAEEEKNENSAAWHDSDDEQFEETRGKTTSRSKLRKKLNRIGNDPKWADLSKHQKESKLGDSDDSDEDAISKTVGFLDKKSMEKRKKGFIPKGELTFKRLKNLNRMTENEGVISAVEFHPKSFVGLVAGRRGLVSLFAVDGRENKKIHNICYEKFFIHSCKLTNDGEELIVGGQLKDFHIYNLMSGYKQRIRLPKGMNHLKYFQVSPCGKYIAAIGDYGEVHLMHAVTKELLFTYKQEYQSTSLNFSLDSTEIYSHSDDNEVTIFDIRTQRVKHRFIDDGCVNGTVLALSPNGKFFATGSRQGFVNIYNRESLFATKYPQPLKVISNLSTEVSDLKFNHTSELLAMCSVDDKNSIKMAHVESGSVFNNFPSHLDSIGHTNMLAFSPESGYLAVGTLSSKVPLYRLSHYNNY
| Type | Start | End | Length |
| CDS |
39504 |
40997 |
1494 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843692 |
WD repeat domain 50 [Culex quinquefasciatus] gb|EDS33903.1| WD repeat domain 50 [Culex quinquefasciatus] |
4e-99 |
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF11942.3 |
Spt5 transcription elongation factor, acidic N-terminal |
0.94 |
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
3.5e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000225298 |
| S. invicta |
SI2.2.0_14839 |
| A. aegypti |
AAEL007573 |
| D. plexippus |
DPOGS200118PA |
| N. vitripennis |
NV16966-PA |
| A. gambiae |
AGAP009046 |
| A. mellifera |
GB19560-PA |
| P. humanus |
PHUM161490-PA |
| T. castaneum |
TC000267 |
| P. vanderplanki |
Pv.04297 |
| B. mori |
BGIBMGA012559-TA |
| C. quinquefasciatus |
CPIJ801703 |
| D. melanogaster |
FBgn0262560 |
| M. musculus |
ENSMUSG00000054079 |
| H. melpomene |
HMEL006756-PA |