MidgeBase gene description page [Pn.06818]
Outline
| Gene ID | Pn.06818 |
| Type | Protein coding gene |
| Scaffold | PnScaf6043 |
| Start | 3821 |
| End | 4991 |
| Direction | + |
Sequence
Transcript: 948 (bp)
ATGGAGTGGTGGATTATTCTGATAATTGTGCTATCGGTGCTTCTCCTTCTCGCCATTTTTCTCTACTTCTTGAGACTTTACATTCGACGAGGCCGCTACGAGGAGGACACAAGGATTGACCACAAAGTCGTGATCGTCACGGGCGCAAACACCGGAATCGGCAAGGAAACGGCCATCGACCTCGCGAGACGCGGCGCACGTGTGTATATCGCGTGCCGTGACATTAAGCGAGGTCAGGACGCGCTCGAGGACATCAAGCGGCGCAGCAAGAGCGACTTCGTCTATTTCCTCCAACTTGACCTCGCCTCGTTCGACTCGGTGAGAAATTTCGTCCAAAAGTTCCGCGAGCACGAGCACAAACTCCACGTACTGGTGAATAATGCCGGTCTGGTTGGCGAGCCGAATGCGAAAACGAGAGAAGGCTTCGCGCTCACGATCGGCGTGAATCATTTGGGGCATTTTCTTCTCACGCATCTGTTGCTCGATTTGCTGATGGTGTCGGCGCCGAGCCGAGTCATCAACGTTTCTTCGATGGGCCACAAATTTGCGAAAATTGAGCGCGACGACTTCGATCCGGACAAGAAGATGTCGGGCGCGGCTGCCTACACCAAGAGCAAGCTCATGAATGTTTTGTTCACGCGCGAATTGGCGCAGAAGGTGCAGGAAGCGAAAATCACCGTCAACTGCTGTCATCCAGGCGTCGTTCGGACGGACATTTCTCGCAACTTCTCCGCCTACGACTTCGTCACGAAAAAAGTGATTGGGACGTTCCTGAAGACACCGGAAGAGGGTGCACAGACGCAAATTAGGCTAGCGGTTGATCCAGAGCTCGAGACCGTGACAGGAAAATACTTCGCAGACTGCAAGGAGGCGAGCATGTCGAAGGACGCAAAGAACGATGAGACAGCTTATTGGCTCTATCGGAAGAGCTACGAGCTCGTAAGATTA
Protein: 316 (aa)
MEWWIILIIVLSVLLLLAIFLYFLRLYIRRGRYEEDTRIDHKVVIVTGANTGIGKETAIDLARRGARVYIACRDIKRGQDALEDIKRRSKSDFVYFLQLDLASFDSVRNFVQKFREHEHKLHVLVNNAGLVGEPNAKTREGFALTIGVNHLGHFLLTHLLLDLLMVSAPSRVINVSSMGHKFAKIERDDFDPDKKMSGAAAYTKSKLMNVLFTRELAQKVQEAKITVNCCHPGVVRTDISRNFSAYDFVTKKVIGTFLKTPEEGAQTQIRLAVDPELETVTGKYFADCKEASMSKDAKNDETAYWLYRKSYELVRL
| Type | Start | End | Length |
| CDS |
3821 |
3894 |
74 |
| CDS |
3964 |
4227 |
264 |
| CDS |
4308 |
4666 |
359 |
| CDS |
4738 |
4988 |
251 |
| intron |
3895 |
3963 |
69 |
| intron |
4228 |
4307 |
80 |
| intron |
4667 |
4737 |
71 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002064114 |
GK19885 [Drosophila willistoni] gb|EDW75100.1| GK19885 [Drosophila willistoni] |
1e-76 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
1.3e-06 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
2.8e-09 |
| Pfam |
PF13676.1 |
TIR domain |
0.069 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.0085 |
| Pfam |
PF08643.5 |
Fungal family of unknown function (DUF1776) |
0.00054 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
4e-21 |
| Pfam |
PF08659.5 |
KR domain |
2.7e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00074 |