MidgeBase gene description page [Pn.06817]
Outline
| Gene ID | Pn.06817 |
| Type | Protein coding gene |
| Scaffold | PnScaf6043 |
| Start | 518 |
| End | 3275 |
| Direction | + |
Sequence
Transcript: 1854 (bp)
ATGTCGGACGATTGCTGTTGCTGGTGTCGCTCAAGTCTGATCGCGATTGCCATTGGCGTTCTTCTCTTCATCCTCAAGAGGCTTCTTAAGCCCGAAAAGTATACGAAGGGAACGCTGATTGAGAACAAAGTGGTCGTCATAACTGGAGCGAATGTCGGCCTGGGCAGAGAAACTGCGATCGAGCTGGCGAAACGCGGCGGCAAAGTTTATTTAGCATGCCGTGACATCCAGCGAGGCGAAGCTGCAGCGATTGAAATAAGAAGGGAAAGTGGCAGCCAGAATGTTCACTTCCTGCAGCTCGATCTGGCGTCTTTGGACTCGGTCAGGGAATTCTCAAAGAGATTCCACGAGAAGGAGAAGAAGCTGCACATTCTCGTCAACAATGCCGGATTAGTCGGAAGTCCGGAGGCGAAGACAAAAGATGGCTTCGAGATGACGATGGGCGTTAATCATCTCGGCCACTTCCTTCTTACGCATCTGCTGCTCGACTTGCTCGAAGCGTCGGCACCGAGCCGCATTGTCAACGTTGCATCCTCGTCGTACTACTTCGCGACGATCCAAGACGACGACTTTGCGGGCGACAAGCACGTCTGGTGGAGCTTCATAACGTATTCGAAGAGCAAACTAGCAAACATTTTATTCACACGCGAATTAGCGAAAAAACTCAAGGGAACGAGCGTTACAGTTAATTCTTGTAATCCGGGAGTCGTTCCGACCAGAATAACGCGCAACATCTCGTTCGCTGACTTTCTCTACGGCATCGTTCTGAGACCAATTCTGAGGACGGAAGTCGAAGGCGCACAAACGCAAATACGTCTGGCGCTCGATCCAGCCCTGGATGAGGTGAGCGGGAAGTACTTTGAGAACTGCAAGCAGGTGACGCCGTGGAAGCACGCTGAAGACGACGAGGCCTCAAGGTGGCTGTACCGAAAAAGTTGTGAACTCGTCAAGCTGAAAAAACATTTCTCAAAACCTTGCAGAAAGTACGTGAAAGGAAGAAATTACACCAAACAAACCTTGATTGAAGACAAAGTGGTGATAATTACGGGAGCAAACACAGGAATCGGGAAAGCTAATGCAGTTGACTTGGCAAGACGCGGTGGAAAAGTTTACATCGCGTGTCGAAGTATCGAGAGAGGAGAAGTAGCTTTGAGAGACATAAAACGAGAGAGCGCGAGCGAAAATGTCTACTTCATGCAGCTTGATCTGGGCTCGCTGGCCTCTGTTCGGGAGTTTTCCACAAAGTTCCATGAGAAGGAGAAAAAGCTTGACATCCTGATCAATAACGCCGGGATTTTCGGAAATCCTCACGGAAAGACCAAGGACGGCTTCGAGATAACTGTAGGAGTGAATCATTTGGGTCACTTTTTGCTCACCCACCTGCTGCTCGATCTGCTGGAGGCTGCCGCTCCAAGTAGAATCATCAATGTCGCGTCTGACGCTCACAAAATGGGGCCACTAAAGAAGGACGACTTCATGACGAAGGCAAATTCAAATAGACTGGAAGCTTATGGCAAGAGCAAGCTTGCCAACGTGCTGTTCAGCCGCGAATTGGCTAAACGTTTGGAAGGAACAAATGTTACCGTCAACAGTTGCCATCCGGGAGTTGTTTCCACTGAAATCGCAAGAGACTGGCCAACTTGGTCTTTCTTCATGAATATCATCTTTCGACCACTGTTGAGGTCACCGATGCAAGGTGCGCAAACCCAAATTTGCATGGCCATCGATCCGGCACTCGAAGGCGTGACTGGAAAATACTTTAACGACTGCATAATCGCACAAGAAGCCGATTTTGCGAAGGATGATGGTGTTGCGAAGTGGTTGTACGAAAAGAGTGCTGAACTGGTTGGTTAC
Protein: 618 (aa)
MSDDCCCWCRSSLIAIAIGVLLFILKRLLKPEKYTKGTLIENKVVVITGANVGLGRETAIELAKRGGKVYLACRDIQRGEAAAIEIRRESGSQNVHFLQLDLASLDSVREFSKRFHEKEKKLHILVNNAGLVGSPEAKTKDGFEMTMGVNHLGHFLLTHLLLDLLEASAPSRIVNVASSSYYFATIQDDDFAGDKHVWWSFITYSKSKLANILFTRELAKKLKGTSVTVNSCNPGVVPTRITRNISFADFLYGIVLRPILRTEVEGAQTQIRLALDPALDEVSGKYFENCKQVTPWKHAEDDEASRWLYRKSCELVKLKKHFSKPCRKYVKGRNYTKQTLIEDKVVIITGANTGIGKANAVDLARRGGKVYIACRSIERGEVALRDIKRESASENVYFMQLDLGSLASVREFSTKFHEKEKKLDILINNAGIFGNPHGKTKDGFEITVGVNHLGHFLLTHLLLDLLEAAAPSRIINVASDAHKMGPLKKDDFMTKANSNRLEAYGKSKLANVLFSRELAKRLEGTNVTVNSCHPGVVSTEIARDWPTWSFFMNIIFRPLLRSPMQGAQTQICMAIDPALEGVTGKYFNDCIIAQEADFAKDDGVAKWLYEKSAELVGY
| Type | Start | End | Length |
| CDS |
518 |
594 |
77 |
| CDS |
653 |
916 |
264 |
| CDS |
981 |
1342 |
362 |
| CDS |
1411 |
1664 |
254 |
| CDS |
2258 |
2544 |
287 |
| CDS |
2602 |
2960 |
359 |
| CDS |
3022 |
3272 |
251 |
| intron |
595 |
652 |
58 |
| intron |
917 |
980 |
64 |
| intron |
1343 |
1410 |
68 |
| intron |
1665 |
2257 |
593 |
| intron |
2545 |
2601 |
57 |
| intron |
2961 |
3021 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003385271 |
PREDICTED: retinol dehydrogenase 13-like [Amphimedon queenslandica] |
1e-110 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
2.4e-11 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
7e-05 |
| Pfam |
PF08643.5 |
Fungal family of unknown function (DUF1776) |
3.2e-07 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
7.4e-41 |
| Pfam |
PF08659.5 |
KR domain |
1.2e-13 |
| Pfam |
PF12242.3 |
NAD(P)H binding domain of trans-2-enoyl-CoA reductase |
0.0035 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS215414PA |
| B. mori |
BGIBMGA012375-TA |
| H. melpomene |
HMEL017435-PA |
| H. melpomene |
HMEL017434-PA |