MidgeBase gene description page [Pn.06812]
Outline
| Gene ID | Pn.06812 |
| Type | Protein coding gene |
| Scaffold | PnScaf6036 |
| Start | 1000 |
| End | 4466 |
| Direction | + |
Sequence
Transcript: 1551 (bp)
ATGATTAATGACAGTTTAACGACTCGCTCTCTGGACTTGAGCGGCCGAGGTTCGACACCCTACAAAGGCGATGACGAGGGCATCTTCATTTCGCGCGTGACCGAGGGCGGCCCCGCCGACCTAGCCGGTCTCCGCGTTGGCGACAAAGTATTAAAAGTCAACGGCATCAACGTGCACGACGCCGACCACTACGACGCCGTCGAAGTGTTGAAGGCATGCGGTGCCGTGCTGGTGCTTCTGGTGTCGCGCGAAGTGACACGCCTCGTCGGCCACCCCGTATTTTTGGAGAACGGCGAGCTCGCCAAAATCGCCATCGACCGCAAGGAGAATGGCGGTATCGGCAAAATCATTCCGGCGCCGATTCAAATTCCGAGCGAGCCTTTCGCGCAACAGCAACAGCAGCCGTTCACGAGCGAAATGACACCACATTCCGCGCCAATTTTGGACGCCGCCTCGGGCCATCACGTAGTCGCTAGTCACATCCTGCACGGCTCCGCCGACGTCGTCCACAAAGTGACGCTTCACACCACTCTCATCCGGGATCAGATCGGACAGGGACTTGGATTTTCGATTGCCGGCGGCAAGGGACATCAGCCGTTCGTCGACGGCTCCGACGGCATTTTCATCTCGCGTCTCACCGAGGGCGGAATTGCGCAGCGCGACGGAAAAGTTCAAGTCGGCGATCGCATCTTGGCGATTAACGGTGTTGATATGCGATCGGCTAATCATGACCACGCTGTTCAGTTACTAACCGACACGCAGAGATTCGTTCGGCTCGTGATCGAGCGCGAAGTGAAGGGACCAATCGAGCCACCGCAGAGTCCGCGCAGTCCGCTGCTGAAGGGGCTCTCGCCCACCGGATACATGGCTAATCGGCCGACATACACGGGCTACCGACGATCCATTGGAGACGTTCTGGAGGGAGGAAATGACGCACTAAATCGCAGCAGAGAGGTAGAGGTCGAGCACCACAACAACAACAATAGCAACATCAACAATAGCAACAACAACATCAACACACTCAAAACGACAGCAACAATTTTAACACACAACACGACGGCGCCACCCACAGCGACAGTTGCGGCGGCTGTTGAGAGGACACCAACACCATCGGAGGCTTTCATCAAGAGCGAGCAGCAGGCTGCACCGCAACCGGCACCGCGTACTCGTCTCTCGTCGCAGAACTCCATTCCAATGACCAACGGCAGCGGCAGCAGCGCTGGCAGCGCGAAGAGCGACGACCCGGCTCAGGCACCGCCGCGTCCAATGACAAGTGAAGATTTCCAAGCGATGATTCCGAAGCACTTTCTTAGCGGCGATAAAAGTATCGAAGTGCAAAGAACATCACCGATAGCCGAGCAGGGAACATCGGCCGTGACGGTAACGGTCAAGAAGGGACAAGCCGATTTGCCAATGCTGCCGCCCGCACCGACGGAACTCGGATTAGTTACTGAGACAATTACAAAGTCCACATTCACAGAAACCGTAATGACACGCGTCACCGATAATCGCTTGATGGAGCCACTAATTAGCGAGGTGAAGATTGATGGA
Protein: 517 (aa)
MINDSLTTRSLDLSGRGSTPYKGDDEGIFISRVTEGGPADLAGLRVGDKVLKVNGINVHDADHYDAVEVLKACGAVLVLLVSREVTRLVGHPVFLENGELAKIAIDRKENGGIGKIIPAPIQIPSEPFAQQQQQPFTSEMTPHSAPILDAASGHHVVASHILHGSADVVHKVTLHTTLIRDQIGQGLGFSIAGGKGHQPFVDGSDGIFISRLTEGGIAQRDGKVQVGDRILAINGVDMRSANHDHAVQLLTDTQRFVRLVIEREVKGPIEPPQSPRSPLLKGLSPTGYMANRPTYTGYRRSIGDVLEGGNDALNRSREVEVEHHNNNNSNINNSNNNINTLKTTATILTHNTTAPPTATVAAAVERTPTPSEAFIKSEQQAAPQPAPRTRLSSQNSIPMTNGSGSSAGSAKSDDPAQAPPRPMTSEDFQAMIPKHFLSGDKSIEVQRTSPIAEQGTSAVTVTVKKGQADLPMLPPAPTELGLVTETITKSTFTETVMTRVTDNRLMEPLISEVKIDG
| Type | Start | End | Length |
| CDS |
1000 |
1039 |
40 |
| CDS |
1104 |
1626 |
523 |
| CDS |
1690 |
1822 |
133 |
| CDS |
2050 |
2233 |
184 |
| CDS |
2373 |
2743 |
371 |
| CDS |
4164 |
4463 |
300 |
| intron |
1040 |
1103 |
64 |
| intron |
1627 |
1689 |
63 |
| intron |
1823 |
2049 |
227 |
| intron |
2234 |
2372 |
139 |
| intron |
2744 |
4163 |
1420 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_733156 |
scribbled, isoform C [Drosophila melanogaster] gb|AAN14078.1| scribbled, isoform C [Drosophila melanogaster] |
1e-126 |
| InterPro |
IPR001478 |
PDZ domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13180.1 |
PDZ domain |
2e-14 |
| Pfam |
PF00595.19 |
PDZ domain (Also known as DHR or GLGF) |
6.4e-36 |
| Pfam |
PF05086.7 |
Dictyostelium (Slime Mold) REP protein |
3.1 |
| Pfam |
PF12396.3 |
Protein of unknown function (DUF3659) |
0.31 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10384 |
| Pn.09458 |
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_06687 |
| H. sapiens |
ENSP00000359925 |
| H. sapiens |
ENSP00000456311 |
| H. melpomene |
HMEL016997-PA |
| P. vanderplanki |
Pv.08034 |
| B. mori |
BGIBMGA006516-TA |
| M. musculus |
ENSMUSG00000032352 |
| B. mori |
BGIBMGA006517-TA |
| D. plexippus |
DPOGS211580PA |
| A. aegypti |
AAEL002340 |
| C. quinquefasciatus |
CPIJ006376 |
| D. melanogaster |
FBgn0263289 |
| H. sapiens |
ENSP00000366756 |
| C. quinquefasciatus |
CPIJ006377 |
| A. aegypti |
AAEL002336 |
| A. gambiae |
AGAP000054 |
| P. humanus |
PHUM127710-PA |
| H. sapiens |
ENSP00000431519 |
| A. mellifera |
GB14945-PA |
| A. mellifera |
GB13159-PA |
| H. sapiens |
ENSP00000349486 |
| H. sapiens |
ENSP00000456561 |
| N. vitripennis |
NV15131-PA |
| H. sapiens |
ENSP00000455629 |
| T. castaneum |
TC011397 |
| D. plexippus |
DPOGS211581PA |
| H. sapiens |
ENSP00000456859 |
| H. sapiens |
ENSP00000322938 |