MidgeBase gene description page [Pn.06786]
Outline
| Gene ID | Pn.06786 |
| Type | Protein coding gene |
| Scaffold | PnScaf5991 |
| Start | 4910 |
| End | 5546 |
| Direction | - |
Sequence
Transcript: 567 (bp)
ATGGGTGCGTACGCAAGAGAACCAGAGAACATTTCCAAGTCATGCAAGGCTCGTGGCGATAACTTGCGAGTTCACTTCAAGAACACCCGCGAAACAGCACAGGCAATCAAGCACATGCCTCTGCGCAGAGCTCAGCGCTTCTTGAAGAATGTCATGGACCAAAAGGAATGCGTTCCTTTCCGTCGTTTCAACGGTGGCGTAGGTCGCTGTGCACAGGCCAAGCAATGGGGAACATCCGTCGGTCGCTGGCCAAAAAAATCGGCCGATTTCATTCTGCAATTGCTGAAAAACGCCGAAGCCAACGCCGATTACAAGGGATTGAATACTGACAACTTAGTTATTGATCATATTCAAGTGAACCGTGCTCCATGCTTGCGTCGTCGTACATACAGAGCTCACGGTCGTATTAATCCATACATGTCGTCGCCGTGCAACATTGAATTAACTCTCACAGAAAAGGAGAAGGTTGTGCCGACGAAGCCAACTGACGACGAACCAGAGAAGAAGAAGGTTTCAAAGAAGAAGCTCCAGAAACAAAAGGAAAAGATGATGCGTGATGAAGGAAAT
Protein: 189 (aa)
MGAYAREPENISKSCKARGDNLRVHFKNTRETAQAIKHMPLRRAQRFLKNVMDQKECVPFRRFNGGVGRCAQAKQWGTSVGRWPKKSADFILQLLKNAEANADYKGLNTDNLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCNIELTLTEKEKVVPTKPTDDEPEKKKVSKKKLQKQKEKMMRDEGN
| Type | Start | End | Length |
| CDS |
4913 |
5398 |
486 |
| CDS |
5466 |
5546 |
81 |
| intron |
5399 |
5465 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACI30068 |
60S ribosomal protein L22 [Anopheles darlingi] |
2e-84 |
| InterPro |
IPR001063 |
Ribosomal protein L22/L17 |
|
| InterPro |
IPR005721 |
Ribosomal protein L22/L17, eukaryotic/archaeal |
|
| InterPro |
IPR018260 |
Ribosomal protein L22/L17, conserved site |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0015934 |
large ribosomal subunit |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF00237.14 |
Ribosomal protein L22p/L17e |
9e-36 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000463842 |
| P. humanus |
PHUM245140-PA |
| H. sapiens |
ENSP00000389465 |
| S. invicta |
SI2.2.0_07112 |
| H. sapiens |
ENSP00000397798 |
| D. plexippus |
DPOGS209544PA |
| M. musculus |
ENSMUSG00000062328 |
| C. quinquefasciatus |
CPIJ015624 |
| H. sapiens |
ENSP00000462385 |
| A. aegypti |
AAEL011471 |
| H. sapiens |
ENSP00000463338 |
| T. castaneum |
TC013536 |
| H. sapiens |
ENSP00000462203 |
| P. vanderplanki |
Pv.11139 |
| H. melpomene |
HMEL016528-PA |
| A. mellifera |
GB17564-PA |
| A. gambiae |
AGAP001459 |
| D. melanogaster |
FBgn0029897 |
| N. vitripennis |
NV13510-PA |
| H. sapiens |
ENSP00000462023 |
| B. mori |
BGIBMGA012414-TA |