MidgeBase gene description page [Pn.06743]
Outline
| Gene ID | Pn.06743 |
| Type | Protein coding gene |
| Scaffold | PnScaf5961 |
| Start | 44681 |
| End | 61794 |
| Direction | + |
Sequence
Transcript: 1389 (bp)
ATGGACTTCACGCTGGATTTTTACTTTCGTCAATTTTGGACAGACCCTCGATTAGCTTATAGAAAGAGGCCTGGCGTGGAGCAACTGTCGGTCGGCTCCGATTTCGTCAAAAGTATTTGGGTGCCGGATACTTTCTTTGTTAATGAAAAACAGTCTTACTTTCACATAGCCACTACTAGCAATGAGTTTATTAGAGTTCACCATTCAGGTTCAATCACTAGAAGTATGCGATTAACAATTACAGCCTCATGTCCCATGAATTTACAATACTTTCCTATGGATCGACAATTGTGTCATATCGAAATCGAAAGTTTCGGCTACACAATGCGAGATATTCGATACTTCTGGAGAGATGGACTTAATTCAGTTGGAATGAGCAGCGAAGTAGAGCTTCCACAATTTAGAGTACTGGGCCACAGGCAGAGGGCGACCGAAATTAACCTAACTACAGGAAATTATTCGCGCTTAGCTTGCGAAATCCAGTTTGTTAGATCAATGGGTTATTATCTTATTCAAATTTATATTCCATCTGGATTAATTGTAATCATATCGTGGGTATCGTTTTGGCTCAATCGTAATGCGACTCCGGCTCGAGTGTCTCTCGGTGTAACAACTGTATTGACAATGACAACACTCATGTCGTCCACAAATGCTGCCTTGCCCAAAATATCATACGTCAAATCGATTGACGTTTATTTGGGTACATGTTTCGTCATGGTGTTTGCCAGTTTGCTCGAATATGCTACGGTCGGCTACATGGCTAAGCGAATTCAGATGCGAAAGCAGCGCTTCATGGCGATCCAGAAAATTGCTGAGCAGAAGAAAATCCAAGTGGACAATGCCCAGCAAAATAATCCTCCGAGTGGCGGTGGAAGCGTCGTCGGTCCGCCCAGTGAGCATTCGCACTCGCACGGACACAGCCACTCGCACCACCCGCACGTACCGAAGCAACAAATGGGCATGGGAAATCGTGGTCCACCCGGTATGTCACTGCAAGGTAATGTTGTTGGCTCAAGAGGATGTTCTATAGTTGGCCCCTTATTTCAAGAAGTTCGCTTCAAAGTGCACGATCCGAAAGCGCACTCAAAGGGTGGAACCCTCGAGAACACAATTAATGGAGGACGTGGTGGTCAACAACAGCCGCCACCTCCACCGCCTGCTGACGAAGAGTCGGGCGGAGGCGGAGGCGGCGGTGGGCCTCCACAGCACCTAATTCATCCAGGGAAAAATATCAACACGCTACTGGGAATTACTCCTTCCGATATCGATAAATACTCACGAATTGTGTTCCCCGTTTGTTTTGCATGTTTCAATTTAATGTACTGGATAATTTATTTACATGTTAGTGATGTTGTAGCCGATGATTTAGTATTACTCGGTGAAGATAAG
Protein: 463 (aa)
MDFTLDFYFRQFWTDPRLAYRKRPGVEQLSVGSDFVKSIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSMRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLNSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVSLGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKIQVDNAQQNNPPSGGGSVVGPPSEHSHSHGHSHSHHPHVPKQQMGMGNRGPPGMSLQGNVVGSRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTINGGRGGQQQPPPPPPADEESGGGGGGGGPPQHLIHPGKNINTLLGITPSDIDKYSRIVFPVCFACFNLMYWIIYLHVSDVVADDLVLLGEDK
| Type | Start | End | Length |
| CDS |
44681 |
44683 |
3 |
| CDS |
46367 |
46593 |
227 |
| CDS |
46687 |
46769 |
83 |
| CDS |
52925 |
53062 |
138 |
| CDS |
60423 |
60707 |
285 |
| CDS |
61060 |
61550 |
491 |
| CDS |
61630 |
61791 |
162 |
| intron |
44684 |
46366 |
1683 |
| intron |
46594 |
46686 |
93 |
| intron |
46770 |
52924 |
6155 |
| intron |
53063 |
60422 |
7360 |
| intron |
60708 |
61059 |
352 |
| intron |
61551 |
61629 |
79 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_316070 |
AGAP006028-PC [Anopheles gambiae str. PEST] gb|EAA44136.4| AGAP006028-PC [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR018000 |
Neurotransmitter-gated ion-channel, conserved site |
|
| InterPro |
IPR006028 |
Gamma-aminobutyric acid A receptor |
|
| InterPro |
IPR006202 |
Neurotransmitter-gated ion-channel ligand-binding |
|
| InterPro |
IPR006029 |
Neurotransmitter-gated ion-channel transmembrane domain |
|
| InterPro |
IPR002289 |
Gamma-aminobutyric-acid A receptor, beta subunit |
|
| InterPro |
IPR006201 |
Neurotransmitter-gated ion-channel |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(BP) |
GO:0006811 |
ion transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(CC) |
GO:0045211 |
postsynaptic membrane |
|
| Gene Ontology(MF) |
GO:0005216 |
ion channel activity |
|
| Gene Ontology(MF) |
GO:0005230 |
extracellular ligand-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004890 |
GABA-A receptor activity |
|
| Pfam |
PF02932.11 |
Neurotransmitter-gated ion-channel transmembrane region |
8.1e-57 |
| Pfam |
PF02931.18 |
Neurotransmitter-gated ion-channel ligand binding domain |
1.1e-40 |
| Pfam |
PF05194.7 |
UreE urease accessory protein, C-terminal domain |
0.034 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL010382-PA |
| P. humanus |
PHUM022650-PA |
| A. aegypti |
AAEL008354 |
| H. melpomene |
HMEL003497-PA |
| A. gambiae |
AGAP006028 |
| B. mori |
BGIBMGA000568-TA |
| A. mellifera |
GB14080-PA |
| C. quinquefasciatus |
CPIJ008419 |
| N. vitripennis |
NV10002-PA |
| D. plexippus |
DPOGS206786PA |
| D. melanogaster |
FBgn0004244 |
| D. plexippus |
DPOGS207184PA |
| B. mori |
BGIBMGA013690-TA |
| P. vanderplanki |
Pv.04156 |
| T. castaneum |
TC010482 |
| B. mori |
BGIBMGA000641-TA |