MidgeBase gene description page [Pn.06738]
Outline
| Gene ID | Pn.06738 |
| Type | Protein coding gene |
| Scaffold | PnScaf5950 |
| Start | 7653 |
| End | 8599 |
| Direction | - |
Sequence
Transcript: 732 (bp)
ATGATTGAGCACTTCCAGTATCCGGACATCTTCCATATGGGCGGCGACGAAGTGTCGGTCAGCTGCTGGAACTCGAGCGCCTCCCTCCAAAAGTGGATGACCTCGAAGGGCTGGGGCCTCGAGGAGAGCGACTTCATGCGCCTGTGGGGTCACTTCCAGAACAATGCGCTCGAGCGTGTCGACAAGGTGAACTTCAAGCGCGTTCCAATAATTTTGTGGACGAGTCGGCTGACGGAGGAGCCGTTCCTGTCGCAGTACCTCAACAAGGACCGCTACATCATTCAGATCTGGACGAAGGGCGACGACCCGAAGGTGCAGACGATCCTCCAGAAGGGATTCAAGATGATCGTGTCGAACTACGACGCTCTCTATCTCGACTGCGGCTTCGGTGCGTGGGTCACCGATGGAAACAATTGGTGCTCTCCATTCATCGGCTGGCAAAAGATCTACGACAACCGCATGGAGACGGTCGCCGGCCCATACGTCGACCAAGTGCTCGGAGCCGAAGCTGCACTTTGGACTGAGCAAGTAGACGAATGGTCTCTCGACGACCGTCTATGGCCCAGAGCATCCGCCATGGCCGAGAGGCTTTGGTCGAACCCGGTTGGAGGCTGGAGAATGGCAGAATCTCGCATGCTCGTTCATCGCCTGCGCCTGGTGAACATCGGAGGACTCGCAGCCGAGAAGCTGCAGCCCGAGTGGTGTCTTCAAAATGAGGGCGATTGCCCCATT
Protein: 244 (aa)
MIEHFQYPDIFHMGGDEVSVSCWNSSASLQKWMTSKGWGLEESDFMRLWGHFQNNALERVDKVNFKRVPIILWTSRLTEEPFLSQYLNKDRYIIQIWTKGDDPKVQTILQKGFKMIVSNYDALYLDCGFGAWVTDGNNWCSPFIGWQKIYDNRMETVAGPYVDQVLGAEAALWTEQVDEWSLDDRLWPRASAMAERLWSNPVGGWRMAESRMLVHRLRLVNIGGLAAEKLQPEWCLQNEGDCPI
| Type | Start | End | Length |
| CDS |
7656 |
7789 |
134 |
| CDS |
7857 |
8021 |
165 |
| CDS |
8084 |
8100 |
17 |
| CDS |
8184 |
8599 |
416 |
| intron |
7790 |
7856 |
67 |
| intron |
8022 |
8083 |
62 |
| intron |
8101 |
8183 |
83 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002093685 |
GE21437 [Drosophila yakuba] gb|EDW93397.1| GE21437 [Drosophila yakuba] |
1e-100 |
| InterPro |
IPR025705 |
Beta-hexosaminidase subunit alpha/beta |
|
| InterPro |
IPR015883 |
Glycoside hydrolase family 20, catalytic core |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0004563 |
beta-N-acetylhexosaminidase activity |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00728.17 |
Glycosyl hydrolase family 20, catalytic domain |
6e-35 |
| Pfam |
PF08713.6 |
DNA alkylation repair enzyme |
0.16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes