MidgeBase gene description page [Pn.06707]
Outline
| Gene ID | Pn.06707 |
| Type | Protein coding gene |
| Scaffold | PnScaf5921 |
| Start | 81447 |
| End | 83107 |
| Direction | - |
Sequence
Transcript: 1518 (bp)
ATGATGGCAGATTCTTCATTCGACGCCAGTGTTTCAACCAAAATGCTAATGCCTCACGAAATCGGTGCCGGTGCATCTGCCAATGCAAATACTGCTAGTCTCGTTGGCCAACATTCCATACATAGCACTTTTAGTGACATTCATCACGGCACAACGTCCTTTTATCATTCGGCTTCAACGATGGCAACTTCAAATTCTGCAACTGGCGGATTCAACGGTTTTCACAATTCCACGTTTCACAATAATTCGTATTCCCATAATAATCATTCAATAACAACAATATCGTCAACGATGCCCCCGCCCCTCATACTTTACAATCAAACGTCTTCATCGTCATCATCATCAGCAGCAGCAGCAACAACACCAACTTCATCACTCTATACAAATACTTTAAGCAATACGAGCGTCGTAGTTGCGAGTCGTCAAGAACAGTCAACCACACAACATCAGCAATTACCGCTTGCGGCTGCACAGTCAGGAAAGCTTACAACCGCCGAAGGTGCCACTAAGAGTGACCGTGCTGTCGCTGCTACCACCGCTGCCGTCGATGGCGCTAGCGAGTCGAACGACGAGCAGCATCAATCGACTGAAGATGTGACGAATGAGGATAACGATGAGCCGGAGATCGATATCGTCATAAGCAATGTTGTGTGTGCATTCAGCGTACGATGCCATTTATCATTAAAAACAATTGCACTGCAAGGTGCGAATGTAGAATTTAAACGTGAAAACGGAATGGTGACAATGAAACTACGCAAACCATACACGACTGCATCAATCTGGTCATCAGGTAAAATTACATGCACAGGCGCGACATCGGAGGAGCAGGCAAAGGTTGCAGCTCGCCGCTATGCTCGCATGCTACAGAAACTCAACTTTCGTGTTCGATTTCAAAATTATCGCGTTGTAAACGTATTGGGAACATGCAAAATGCCTTGGGCCATAAAAATTGTTCAGTTCTCGGAGAAGTACAAGAAAGAGGCAAGCTATGAGCCAGAGTTGCATCCGGGTGTCACGTATAACCTTAAGAATCCCACTGCCACACTCAAAATTTTCTCTACTGGAAGCATGACAGTGACAGCGCGGAGTGTTGCCGATGTGCAAGCAGCTATCGAACACATCTACCCGCTCGTCTACGAATTCAAGAAACCACGTACCGAAGAAATAAATAACGGCGAGACCGAGGAAGTCTACGCTGACATTATAGAGACCGATTACGAAATGGATGACGACATAAGTGACGAGGACGATGCAGTCGATCCGCTCGAAGATCCACTCAACGGTCCAATCGATGACGACGACGATGACGAAGAAGTTGACTCCCCTACGCCGCCTTCAAAGAAGCAGAAGCTCCGCGATATTTCACACTTGACCAAGCGCTACAAAGGACCGCCGACGAAACGGCGAGGCGGTAAAGCGAGCTCGGGCAGTGGTTCGAAGCGTCCTTTAGGCAAAATGAACGATCCAAAGCAGGATTTAATTTATGTTAGTGACGGTGATGTTGACGGTGATGATTTT
Protein: 506 (aa)
MMADSSFDASVSTKMLMPHEIGAGASANANTASLVGQHSIHSTFSDIHHGTTSFYHSASTMATSNSATGGFNGFHNSTFHNNSYSHNNHSITTISSTMPPPLILYNQTSSSSSSSAAAATTPTSSLYTNTLSNTSVVVASRQEQSTTQHQQLPLAAAQSGKLTTAEGATKSDRAVAATTAAVDGASESNDEQHQSTEDVTNEDNDEPEIDIVISNVVCAFSVRCHLSLKTIALQGANVEFKRENGMVTMKLRKPYTTASIWSSGKITCTGATSEEQAKVAARRYARMLQKLNFRVRFQNYRVVNVLGTCKMPWAIKIVQFSEKYKKEASYEPELHPGVTYNLKNPTATLKIFSTGSMTVTARSVADVQAAIEHIYPLVYEFKKPRTEEINNGETEEVYADIIETDYEMDDDISDEDDAVDPLEDPLNGPIDDDDDDEEVDSPTPPSKKQKLRDISHLTKRYKGPPTKRRGGKASSGSGSKRPLGKMNDPKQDLIYVSDGDVDGDDF
| Type | Start | End | Length |
| CDS |
81450 |
81886 |
437 |
| CDS |
81963 |
82253 |
291 |
| CDS |
82318 |
83107 |
790 |
| intron |
81887 |
81962 |
76 |
| intron |
82254 |
82317 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663841 |
tata-box binding protein [Aedes aegypti] gb|EAT34075.1| tata-box binding protein [Aedes aegypti] |
5e-93 |
| InterPro |
IPR000814 |
TATA-box binding protein |
|
| InterPro |
IPR012295 |
Beta2-adaptin/TBP, C-terminal domain |
|
| InterPro |
IPR015445 |
TATA-Box binding protein-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(BP) |
GO:0006367 |
transcription initiation from RNA polymerase II promoter |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF11858.3 |
Domain of unknown function (DUF3378) |
0.0018 |
| Pfam |
PF14428.1 |
SCP1.201-like deaminase |
0.12 |
| Pfam |
PF00352.16 |
Transcription factor TFIID (or TATA-binding protein, TBP) |
3e-47 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL012402-PA |
| C. quinquefasciatus |
CPIJ003789 |
| H. sapiens |
ENSP00000237264 |
| D. plexippus |
DPOGS201327PA |
| P. vanderplanki |
Pv.10365 |
| T. castaneum |
TC014666 |
| N. vitripennis |
NV17354-PA |
| A. gambiae |
AGAP007517 |
| A. gambiae |
AGAP000336 |
| P. humanus |
PHUM375280-PA |
| A. aegypti |
AAEL013653 |
| M. musculus |
ENSMUSG00000071359 |
| A. mellifera |
GB19158-PA |
| D. melanogaster |
FBgn0261793 |
| S. invicta |
SI2.2.0_07503 |
| H. sapiens |
ENSP00000356845 |
| B. mori |
BGIBMGA003121-TA |