MidgeBase gene description page [Pn.06664]
Outline
| Gene ID | Pn.06664 |
| Type | Protein coding gene |
| Scaffold | PnScaf5888 |
| Start | 16885 |
| End | 22304 |
| Direction | + |
Sequence
Transcript: 933 (bp)
ATGGAACCGCCGCGTGAAAACTCCCCATCGACGCCGTCGAGGTATCTCAACAGCTACCTCCAGCAGAACCCAACCGAGCTCTTTCATCAGAACTTTCCGCAGCGGCAATTATCGAATCAGCAGTTCTACGCTGCAGCGGCCGCCGCTGATAATCTCTCAACGAACAATAAAAGCTACTTAAAGCGTCACCATCAGAGCTACGAGAAAAATGATGGCGAGCGCGACAAGAAGTACGAGAAGTACGACAGCAAGAAGCTCGAGGAGCAGGCCATCCATCAGACGCAGGCACACGGTTACGACGGCTTCCACAGCGATGCCTACTCGACCGGTGGCGGTGGAGGAGGAGGAGGCGGCGGCGGAGGAAGCATTGCGCCGTCGAGCGGATCAGGCACAACGGCAGCGACGACAACACCTCAGCAGAAAGCGGGCGCCAACACAAAGAGCCTCTCGAATGGCAAGAAAACCAAAGGACGTGTCAAAATTAAGATGGAGTACATAGACAATAAGCTGCGTCGCTACACGACGTTCTCGAAGAGGAAAACTGGCATCATGAAGAAGGCCTACGAGTTGTCGACGTTGACGGGCACGCAAGTGATGCTGCTGGTGGCGTCCGAAACGGGTCACGTTTACACCTTCGCCACGCGCAAGCTCCAACCAATGATCACGTCGGAAGCGGGCAAGACGCTCATCCAGACGTGCCTCAACTCGCCGGACCTGTCGGCGACGGCCGCGAGCAGCGACCAGCGCATGTCGGCGACGGGCTTCGAGGAGACGGAGCTCAACTATAGCATTTCAGATATCGGCGACAATCCGGGCGACAAGGAAAAACAGGGCTTCTACGAAAATCAAAACTTGCAGAACGCCTCCACGCAAAACTATCACAGCCTCGCGACGGCCGCGGCCTCAGTGGCCGGCCAAACGCAGTCGCACCGA
Protein: 311 (aa)
MEPPRENSPSTPSRYLNSYLQQNPTELFHQNFPQRQLSNQQFYAAAAAADNLSTNNKSYLKRHHQSYEKNDGERDKKYEKYDSKKLEEQAIHQTQAHGYDGFHSDAYSTGGGGGGGGGGGGSIAPSSGSGTTAATTTPQQKAGANTKSLSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKTLIQTCLNSPDLSATAASSDQRMSATGFEETELNYSISDIGDNPGDKEKQGFYENQNLQNASTQNYHSLATAAASVAGQTQSHR
| Type | Start | End | Length |
| CDS |
16885 |
17442 |
558 |
| CDS |
21759 |
22028 |
270 |
| CDS |
22197 |
22301 |
105 |
| intron |
17443 |
21758 |
4316 |
| intron |
22029 |
22196 |
168 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003398951 |
PREDICTED: serum response factor homolog isoform 2 [Bombus terrestris] |
1e-56 |
| InterPro |
IPR002100 |
Transcription factor, MADS-box |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0046983 |
protein dimerization activity |
|
| Pfam |
PF07172.6 |
Glycine rich protein family |
0.31 |
| Pfam |
PF00319.13 |
SRF-type transcription factor (DNA-binding and dimerisation domain) |
1.1e-23 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL017830-PA |
| D. melanogaster |
FBgn0004101 |
| B. mori |
BGIBMGA001384-TA |
| N. vitripennis |
NV18787-PA |
| C. quinquefasciatus |
CPIJ008335 |
| P. humanus |
PHUM516920-PA |
| A. mellifera |
GB15081-PA |
| D. plexippus |
DPOGS214519PA |
| T. castaneum |
TC004911 |
| S. invicta |
SI2.2.0_15089 |
| A. gambiae |
AGAP010512 |
| P. vanderplanki |
Pv.02407 |
| A. aegypti |
AAEL008720 |