MidgeBase gene description page [Pn.06625]
Outline
| Gene ID | Pn.06625 |
| Type | Protein coding gene |
| Scaffold | PnScaf5861 |
| Start | 18847 |
| End | 19945 |
| Direction | + |
Sequence
Transcript: 927 (bp)
ATGCTCGTTAACGAAGTCATTCCATTCCAACAATCGTGGATCGAAAATGTCAACATTGACTTGCGAGGTCTGGAGGCTGCCGTAAATCTGCTTGTCAACCACCGCGAGGTCACATCGGACGAGAATGTCGTTGCCTTCGCTTTGCGTGCCCTCACTCTGACTGACCTGACGACACTCGCCGGCGATGATTGCACCTCGAATGTCGAACGACTGTGCGTTCGTGCCTGCTTTCCGTTCTTCAAGAACTCCCTTGCCGACGACTCTGACGAGTTCCTCAAGAGTCTGCACGTGGCAGCCATCTGCGTGTATCCGACCAAAGTCAAAGACGCGAAAGACACTCTCAAGCGACTCAACGCGCTCGACAAGATCCAAATTGCCTCGGTCGCGACCGGCTTTCCGACTGGCCTCTACCCTCTGCAGTCTCGTCTCGACGAAGTGAAGTTTGCCATAGCGAATGGCGCGACTGAAATCGATATCGTAATTGATCGCAGCCTCGTGCTGACACATCAGTGGACGAAGCTGTACGAGGAAGTCGTCGAGATGAGAAAAGCTTGCGGAAATCTTGCGCACTTGAAGACAATTTTGGGCATTGGCGAGTGCGGCACCATGCAAAATGTCTACAAGGCGTCCATGATCTGCATGATGGCGGGTGCTGACTTCATCAAGACAAGCACCGGCAAGGAGAGTGTCAATGCGACTCTTCCAGTCGGTCTGTGCATGATTCGAGTCATTCAAGAGTTCCGCCGTCTGACTGGAAAGAAAATCGGACTGAAGCCGGCTGGCGGAGTTCGCACTGTGAAGGATGCAATTCAATGGCTGATCATGGTGAAAGAAACGCTCGGCAGTGAGTACTTGCAGCCGCATCTCTTCCGCTTCGGTGCCTCTGGCCTGCTCGATGACATCGAAAAAGTCGTCAAAAGCAAGTGT
Protein: 309 (aa)
MLVNEVIPFQQSWIENVNIDLRGLEAAVNLLVNHREVTSDENVVAFALRALTLTDLTTLAGDDCTSNVERLCVRACFPFFKNSLADDSDEFLKSLHVAAICVYPTKVKDAKDTLKRLNALDKIQIASVATGFPTGLYPLQSRLDEVKFAIANGATEIDIVIDRSLVLTHQWTKLYEEVVEMRKACGNLAHLKTILGIGECGTMQNVYKASMICMMAGADFIKTSTGKESVNATLPVGLCMIRVIQEFRRLTGKKIGLKPAGGVRTVKDAIQWLIMVKETLGSEYLQPHLFRFGASGLLDDIEKVVKSKC
| Type | Start | End | Length |
| CDS |
18847 |
18874 |
28 |
| CDS |
18931 |
19284 |
354 |
| CDS |
19339 |
19557 |
219 |
| CDS |
19617 |
19942 |
326 |
| intron |
18875 |
18930 |
56 |
| intron |
19285 |
19338 |
54 |
| intron |
19558 |
19616 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001851261 |
deoxyribose-phosphate aldolase [Culex quinquefasciatus] gb|EDS33317.1| deoxyribose-phosphate aldolase [Culex quinquefasciatus] |
1e-112 |
| InterPro |
IPR013785 |
Aldolase-type TIM barrel |
|
| InterPro |
IPR011343 |
Deoxyribose-phosphate aldolase |
|
| InterPro |
IPR002915 |
Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase |
|
| Gene Ontology(BP) |
GO:0009264 |
deoxyribonucleotide catabolic process |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0016829 |
lyase activity |
|
| Gene Ontology(MF) |
GO:0004139 |
deoxyribose-phosphate aldolase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF01791.4 |
DeoC/LacD family aldolase |
2.9e-32 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000431757 |
| A. aegypti |
AAEL003246 |
| T. castaneum |
TC012896 |
| N. vitripennis |
NV11015-PA |
| A. mellifera |
GB14849-PA |
| H. sapiens |
ENSP00000436999 |
| P. vanderplanki |
Pv.02603 |
| A. gambiae |
AGAP009161 |
| C. quinquefasciatus |
CPIJ009336 |
| D. melanogaster |
FBgn0033735 |
| P. humanus |
PHUM601510-PA |
| H. sapiens |
ENSP00000416583 |
| M. musculus |
ENSMUSG00000030225 |
| B. mori |
BGIBMGA009955-TA |
| D. plexippus |
DPOGS205757PA |
| H. melpomene |
HMEL007747-PA |