MidgeBase gene description page [Pn.06604]
Outline
| Gene ID | Pn.06604 |
| Type | Protein coding gene |
| Scaffold | PnScaf5848 |
| Start | 773 |
| End | 1677 |
| Direction | - |
Sequence
Transcript: 774 (bp)
ATGGAAAAGTGGCGGGGAAAAATCGCAGTTGTGACCGGTGCTTCGAGCGGCATAGGCAGAGCCATCGTCGAGGATTTAGCGAAGCATGGCATGGTGGTCGTGGGACTTGCGAGGAGCGTCGAAAAAATCGAGAAATTTGCCGGCGAATTGCCAAGCAATTATGGAGCCGTGCACGCCCGCTACTGCGATGTTAGCAGCCTGGAGAGCATCCGCGATGCTTTTAAGTGGATCGAGAGTGAGTTTGGCGCTGTCAATATTCTGGTGAACAATGCTGGCATCGCAAGAAAGACCTCGATTCTCACCGATAACCCGGAGGCTGACGAGAAGTTCGCTGAAGTCGTAGACACAAATTTCACGGGCTTGGTGCAAGTCACTCGACATGCATATGTTTTGATGAAAAAGTCCGAAGACTACGGCATGATTGTGAACATTTCGTCGGTGGCTGGTCACAGTGTTCCCTTTCCGCATTACGGTGTTCCCGAGACGAATGTTTACAACGGAACCAAGTTTGCTCTTCGAGCCACCACTGAGTATCTGCGCCATGAGCTTGTCCAGATGAAAAACAAGAAGGTCCGCGTATCGTCAGTAAGCCCGGGAGTGGTTGACACCTCGTTCTTCCACTCGTCACAAATGCTGCCGGAGAACGTCGAGATGCGAGATGTGGCGCCCGTTCTGAATCCATCCGACATTTCCGACGCTGTCATTTACCTGCTTCAAGTGCCCTACCACGTGAACATCACGGAAATGACTGTCCGACCGGTCGGGGAAAGTTTT
Protein: 258 (aa)
MEKWRGKIAVVTGASSGIGRAIVEDLAKHGMVVVGLARSVEKIEKFAGELPSNYGAVHARYCDVSSLESIRDAFKWIESEFGAVNILVNNAGIARKTSILTDNPEADEKFAEVVDTNFTGLVQVTRHAYVLMKKSEDYGMIVNISSVAGHSVPFPHYGVPETNVYNGTKFALRATTEYLRHELVQMKNKKVRVSSVSPGVVDTSFFHSSQMLPENVEMRDVAPVLNPSDISDAVIYLLQVPYHVNITEMTVRPVGESF
| Type | Start | End | Length |
| CDS |
776 |
967 |
192 |
| CDS |
1039 |
1336 |
298 |
| CDS |
1394 |
1677 |
284 |
| intron |
968 |
1038 |
71 |
| intron |
1337 |
1393 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001846363 |
3-oxoacyl-[acyl-carrier-protein] reductase [Culex quinquefasciatus] gb|EDS43374.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Culex quinquefasciatus] |
5e-57 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
1.6e-15 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
5.1e-07 |
| Pfam |
PF03807.12 |
NADP oxidoreductase coenzyme F420-dependent |
0.011 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
5.1e-27 |
| Pfam |
PF12242.3 |
NAD(P)H binding domain of trans-2-enoyl-CoA reductase |
0.032 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
0.0023 |
| Pfam |
PF03435.13 |
Saccharopine dehydrogenase |
0.075 |
| Pfam |
PF08659.5 |
KR domain |
2.6e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.11082 |
| Pn.01946 |
| Pn.01947 |
| Pn.06730 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10631 |
| N. vitripennis |
NV15599-PA |
| C. quinquefasciatus |
CPIJ016921 |
| T. castaneum |
TC015602 |
| T. castaneum |
TC010240 |
| T. castaneum |
TC015601 |
| S. invicta |
SI2.2.0_11801 |
| M. musculus |
ENSMUSG00000034449 |
| H. melpomene |
HMEL013944-PA |
| H. sapiens |
ENSP00000251312 |
| C. quinquefasciatus |
CPIJ002522 |
| A. aegypti |
AAEL017320 |
| P. vanderplanki |
Pv.14147 |
| D. plexippus |
DPOGS212697PA |
| N. vitripennis |
NV18399-PA |
| P. vanderplanki |
Pv.11149 |
| B. mori |
BGIBMGA005248-TA |
| N. vitripennis |
NV17960-PA |
| N. vitripennis |
NV13417-PA |
| H. melpomene |
HMEL008611-PA |
| N. vitripennis |
NV17959-PA |
| T. castaneum |
TC003807 |
| T. castaneum |
TC015603 |
| N. vitripennis |
NV13416-PA |
| T. castaneum |
TC015414 |
| H. melpomene |
HMEL013953-PA |
| A. aegypti |
AAEL017452 |
| D. melanogaster |
FBgn0038878 |
| A. mellifera |
GB11351-PA |
| A. gambiae |
AGAP005503 |
| P. humanus |
PHUM184020-PA |
| D. melanogaster |
FBgn0026268 |
| A. aegypti |
AAEL017179 |
| D. melanogaster |
FBgn0031775 |
| A. gambiae |
AGAP005645 |
| N. vitripennis |
NV15992-PA |
| P. vanderplanki |
Pv.11148 |
| A. gambiae |
AGAP005501 |
| N. vitripennis |
NV18398-PA |
| C. quinquefasciatus |
CPIJ004598 |
| N. vitripennis |
NV11076-PA |
| C. quinquefasciatus |
CPIJ004600 |
| N. vitripennis |
NV14799-PA |
| T. castaneum |
TC015159 |
| A. aegypti |
AAEL017302 |
| D. melanogaster |
FBgn0036380 |
| A. mellifera |
GB12522-PA |
| A. gambiae |
AGAP005502 |
| D. melanogaster |
FBgn0263830 |
| A. aegypti |
AAEL001461 |
| C. quinquefasciatus |
CPIJ016923 |
| D. melanogaster |
FBgn0069973 |
| A. aegypti |
AAEL007669 |
| N. vitripennis |
NV14020-PA |
| C. quinquefasciatus |
CPIJ016922 |
| D. melanogaster |
FBgn0030332 |
| A. aegypti |
AAEL010075 |
| T. castaneum |
TC005026 |
| T. castaneum |
TC015554 |
| N. vitripennis |
NV17958-PA |
| A. gambiae |
AGAP005499 |
| N. vitripennis |
NV12492-PA |
| T. castaneum |
TC015599 |
| P. vanderplanki |
Pv.14153 |
| T. castaneum |
TC014887 |
| T. castaneum |
TC015161 |
| H. sapiens |
ENSP00000456222 |
| H. melpomene |
HMEL013949-PA |
| C. quinquefasciatus |
CPIJ004599 |
| N. vitripennis |
NV17961-PA |
| C. quinquefasciatus |
CPIJ004601 |
| T. castaneum |
TC010257 |
| N. vitripennis |
NV13189-PA |
| T. castaneum |
TC015100 |