MidgeBase gene description page [Pn.06603]
Outline
| Gene ID | Pn.06603 |
| Type | Protein coding gene |
| Scaffold | PnScaf5848 |
| Start | 44 |
| End | 614 |
| Direction | - |
Sequence
Transcript: 507 (bp)
ATGGAGACCTGGAAGGGAAAGTTCGCCGTCGTCACGGGAGCATCTGCCGGCATCGGGAAGGAAATCGTCAAAGATCTCGCCAAGAATGGCATCAATGTCATCGGCCTAGCCCGCCGACCCGAACTGATTGAGGAGTACGGCAAGGAGATTGTCGGCGGAAAGGTCTATGCGCAAAAATGCGACGTTTCCGACCTCCAGTCGATTAAGGACGCGTTCAAGTGGATCAAGGAGACGTTCGGTGTGATTCACATCTTGGTGAATAATGCCGGCGTGCTCAGGAACATCAAAATTCTTGCCGAACAGGATTACAGCAGTGAAATCGAGCAGACAATCAACACCAACTTCACTGGACTCGTGCACTGCACTCACGCCGCCTATCAATTGATGAAGAAGTCAAACGACTACGGCATGATCATCAACATCAACAGCAATGCCGGTCACCGCATTTTCTTCCCACCCGACGGCAATTCCCACAACGTTTACCACGGAACTAAGCATGCGGTGAGT
Protein: 169 (aa)
METWKGKFAVVTGASAGIGKEIVKDLAKNGINVIGLARRPELIEEYGKEIVGGKVYAQKCDVSDLQSIKDAFKWIKETFGVIHILVNNAGVLRNIKILAEQDYSSEIEQTINTNFTGLVHCTHAAYQLMKKSNDYGMIININSNAGHRIFFPPDGNSHNVYHGTKHAVS
| Type | Start | End | Length |
| CDS |
47 |
125 |
79 |
| CDS |
187 |
614 |
428 |
| intron |
126 |
186 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADB03639 |
NADP+-dependent farnesol dehydrogenase 1 [Aedes aegypti] |
2e-34 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
0.0016 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
6e-09 |
| Pfam |
PF04321.12 |
RmlD substrate binding domain |
0.011 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
7.4e-08 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
2.8e-23 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
0.00076 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.021 |
| Pfam |
PF08659.5 |
KR domain |
7.4e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_02033 |
| B. mori |
BGIBMGA013123-TA |
| A. mellifera |
GB15662-PA |
| A. mellifera |
GB15506-PA |
| D. melanogaster |
FBgn0030073 |