MidgeBase gene description page [Pn.06580]
Outline
| Gene ID | Pn.06580 |
| Type | Protein coding gene |
| Scaffold | PnScaf5828 |
| Start | 39043 |
| End | 44347 |
| Direction | - |
Sequence
Transcript: 2478 (bp)
ATGAGCTATCAAATGTCACAAAATCGCACAATGTCCCACAACCCATACCAGAACTCCGAGATGGCGATGGGCAAGGACCAGCAGACGCTGATGTGGCAACAGAACTCCTACTTGGCGGGCGGTGATTCGGGCATCCAGTCGGGTGCGATCACACAGGTGCCGTCTTTGAGCGGCAAGGACGACGACGAGATGACTGGCGGCGACGACACGCTCATGTTCGACCTCGACCAGGGCTTCAATCAGAACTACACGCAGGACCAGGTCGACGACATGAACCAGCAGCTGAACCAGACGCGCAGCCAGCGAGTTCGCGCCGCGATGTTCCCCGAGACGCTGGAGGAGGGCATCGAGATTCCGTCGACGCAGTTCGACCCCCAGCAACCGACCGCCGTCCAGCGTCTGTCGGAGCCGTCGCAAATGCTGAAGCACGCCGTCGTCAACCTGATCAACTACCAGGACGACGCCGACTTGGCCACGCGCGCAATTCCCGAGCTCATTAAGCTCCTCAACGACGAGGACCAAGTGGTGGTCTCGCAGGCCGCCATGATGGTCCACCAGCTGTCGAAGAAGGAGGCGTCGCGTCACGCCATCATGAACAGCCCGCAGATGGTGGCTGCCTTGGTGCGCGCCCTCTCCACCAGCAACGACCTCGAGACGACCAAGGGCGCGGTCGGAACGCTCCACAACTTGTCGCACCACCGACAAGGTCTGTTGGCGATCTTCAAGAGCGGCGGCATTCCGGCCCTCGTCAAGCTCCTCTCGTCGCCCGTCGAGAGTGTCCTCTTCTACGCCATCACGACCCTCCACAATCTGCTGCTCCATCAGGACGGCTCGAAAATGGCCGTGCGCTTGGCCGGTGGTCTGCAGAAAATGGTCGCTCTGCTGCAGCGCAACAACGTCAAGTTCCTGGCCATCGTCACGGACTGCCTGCAGATCTTGGCATACGGCAATCAGGAGAGCAAGCTGATCATTCTCGCCTCCACCGGACCCATCGAGCTCGTCCGCATCATGCGCTCGTACGACTACGAGAAGTTGCTGTGGACGACGTCTCGCGTCCTCAAGGTGTTGTCGGTGTGCTCGAGCAACAAGCCGGCGATCGTGGAGGCGGGCGGAATGCAGGCGCTGGCCATGCACTTGGGAAATCCCTCGCAGCGCTTGGTGCAGAACTGCTTGTGGACACTGCGAAACTTGTCCGATGCCGCCACCAAGGTCGACGGCCTCGAGAATCTGCTGCAAGGCCTCGTCCACGTCCTCGCCAGCTCCGACGTCAATGTCGTCACGTGCGCCGCCGGAATTCTGTCGAATTTGACGTGCAACAATCAGCGCAACAAGGTGACCGTGTGTCAAGTGGGCGGCGTCGAGGCGCTCGTCCGCACCATCATCAATGCCGGCGACCGCGAGGAAATCACCGAGCCGGCCGTGTGCGCCCTCCGTCATTTGACGTCGCGCCACCAAGAGTCGGATGCGGCACAGAACTTGGTGCGCCAAAACTACGGACTGCCGGTGATTGTGAAGCTGTTGCATCCGCCATCGCGCTGGCCTCTCGTGAAGGCCGTCATCGGGCTCATTCGCAACTTGGCCATCTGCCCGGCCAATTCGTCGCCACTGCGCGAGCACGGAGCGATCCATCATCTCGTCCGGTTGCTCATTCGCGCGTTCCAGGACACGCAGCGCCAACGATCGTCTGTGGCAACAAGTGGCTCGCAGCAGCCAGGTGCATACGCCGACGGCGTGCGAATGGAGGAAATTGTCGAGGGCACAGTCGGTGCTCTGCACATTCTCTCGAAGGATGAATACAATCGTCAATTGATACGTCAACAAAATGTCATTCCCGTGTTTGTGCAATTGCTCTTCTACAACGACATCGAAAACATTCAGAGAGTCGCCGCAGGAGTTTTGTGTGAACTAGCAGTTGACAAGGAGGTGGCAGAATTGATCGAGCAAGAAGGTGCAACCGCGCCTCTGACTGAATTGTTGAATTCAGCTAATGAAGGCGTTGCCACATACGCGGCCGCTGTCCTCTTCAAAATGAGCGAAGACAAGTCTTTGGACTACAAGAAACGTTTCTCGAGCGAGCTTACAACTTTACCAGTATTTCGTGATGATCAGATGTGGAATAATGGCGACTTGACTATCGGGCCAGACCTACAGGACATTTTGGCACCGGATCAAGCCTACGAGGGTCTCTATGGACAGAATCCCAATGGAAATGGTCGTGCATATCAGCAAGGATATGATACACTACCAATCGATTCAATGCAAGGTCTAGAGATCGGCGGAGGCCAGCAGCAGCAGAACCTGATGGGCATGAACACCGGTCCACCGACCTCGCCCAACATGATGGACATGGAGTGCGTGATTGGCGAAATGGACGCCAGCGAGTTGACATTCCAGCACCACATGGGAAATGAGTCAATGATGCCATCGCCGCCAGCAAATGACAACTCACAGGTCGCTGCCTGGTACGACACAGATTTG
Protein: 826 (aa)
MSYQMSQNRTMSHNPYQNSEMAMGKDQQTLMWQQNSYLAGGDSGIQSGAITQVPSLSGKDDDEMTGGDDTLMFDLDQGFNQNYTQDQVDDMNQQLNQTRSQRVRAAMFPETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRALSTSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVALLQRNNVKFLAIVTDCLQILAYGNQESKLIILASTGPIELVRIMRSYDYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGNPSQRLVQNCLWTLRNLSDAATKVDGLENLLQGLVHVLASSDVNVVTCAAGILSNLTCNNQRNKVTVCQVGGVEALVRTIINAGDREEITEPAVCALRHLTSRHQESDAAQNLVRQNYGLPVIVKLLHPPSRWPLVKAVIGLIRNLAICPANSSPLREHGAIHHLVRLLIRAFQDTQRQRSSVATSGSQQPGAYADGVRMEEIVEGTVGALHILSKDEYNRQLIRQQNVIPVFVQLLFYNDIENIQRVAAGVLCELAVDKEVAELIEQEGATAPLTELLNSANEGVATYAAAVLFKMSEDKSLDYKKRFSSELTTLPVFRDDQMWNNGDLTIGPDLQDILAPDQAYEGLYGQNPNGNGRAYQQGYDTLPIDSMQGLEIGGGQQQQNLMGMNTGPPTSPNMMDMECVIGEMDASELTFQHHMGNESMMPSPPANDNSQVAAWYDTDL
| Type | Start | End | Length |
| CDS |
39046 |
39293 |
248 |
| CDS |
40193 |
40271 |
79 |
| CDS |
40563 |
40729 |
167 |
| CDS |
40795 |
40900 |
106 |
| CDS |
41362 |
41565 |
204 |
| CDS |
41639 |
43281 |
1643 |
| CDS |
44317 |
44347 |
31 |
| intron |
39294 |
40192 |
899 |
| intron |
40272 |
40562 |
291 |
| intron |
40730 |
40794 |
65 |
| intron |
40901 |
41361 |
461 |
| intron |
41566 |
41638 |
73 |
| intron |
43282 |
44316 |
1035 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001662670 |
armadillo [Aedes aegypti] sp|Q17GS9.1|ARM_AEDAE RecName: Full=Armadillo segment polarity protein gb|EAT45858.1| armadillo [Aedes aegypti] |
0.0 |
| InterPro |
IPR013284 |
Beta-catenin |
|
| InterPro |
IPR011989 |
Armadillo-like helical |
|
| InterPro |
IPR000225 |
Armadillo |
|
| InterPro |
IPR016024 |
Armadillo-type fold |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005488 |
binding |
|
| Pfam |
PF12717.2 |
non-SMC mitotic condensation complex subunit 1 |
0.00061 |
| Pfam |
PF04826.8 |
Armadillo-like |
0.00022 |
| Pfam |
PF00514.18 |
Armadillo/beta-catenin-like repeat |
1.5e-55 |
| Pfam |
PF05804.7 |
Kinesin-associated protein (KAP) |
3.4e-11 |
| Pfam |
PF01602.15 |
Adaptin N terminal region |
4.3e-09 |
| Pfam |
PF02985.17 |
HEAT repeat |
6.7e-06 |
| Pfam |
PF09759.4 |
Spinocerebellar ataxia type 10 protein domain |
0.039 |
| Pfam |
PF08167.7 |
rRNA processing/ribosome biogenesis |
0.0014 |
| Pfam |
PF13513.1 |
HEAT-like repeat |
0.00019 |
| Pfam |
PF05536.6 |
Neurochondrin |
0.00022 |
| Pfam |
PF10508.4 |
Proteasome non-ATPase 26S subunit |
5.9e-05 |
| Pfam |
PF13646.1 |
HEAT repeats |
3.4e-19 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC012389 |
| H. sapiens |
ENSP00000377508 |
| H. sapiens |
ENSP00000379488 |
| H. sapiens |
ENSP00000344456 |
| A. gambiae |
AGAP001043 |
| H. sapiens |
ENSP00000457186 |
| H. sapiens |
ENSP00000377507 |
| P. humanus |
PHUM000560-PA |
| H. sapiens |
ENSP00000456770 |
| D. plexippus |
DPOGS202116PA |
| A. mellifera |
GB12463-PA |
| H. sapiens |
ENSP00000411449 |
| H. sapiens |
ENSP00000394146 |
| H. sapiens |
ENSP00000379486 |
| A. mellifera |
GB15531-PA |
| A. aegypti |
AAEL002887 |
| P. humanus |
PHUM000580-PA |
| H. sapiens |
ENSP00000456867 |
| S. invicta |
SI2.2.0_02762 |
| N. vitripennis |
NV16988-PA |
| H. sapiens |
ENSP00000385604 |
| H. sapiens |
ENSP00000311113 |
| H. sapiens |
ENSP00000411226 |
| P. vanderplanki |
Pv.12000 |
| H. sapiens |
ENSP00000455424 |
| H. melpomene |
HMEL008024-PA |
| C. quinquefasciatus |
CPIJ006700 |
| M. musculus |
ENSMUSG00000001552 |
| P. humanus |
PHUM280840-PA |
| D. melanogaster |
FBgn0000117 |
| H. sapiens |
ENSP00000455782 |
| H. sapiens |
ENSP00000389886 |
| H. sapiens |
ENSP00000454630 |
| T. castaneum |
TC012388 |
| B. mori |
BGIBMGA006959-TA |