MidgeBase gene description page [Pn.06574]
Outline
| Gene ID | Pn.06574 |
| Type | Protein coding gene |
| Scaffold | PnScaf5828 |
| Start | 11626 |
| End | 12128 |
| Direction | + |
Sequence
Transcript: 441 (bp)
ATGAAGGCTGACGAGAGTTCTACTAAAATCAAATTGGAAGACAATTACGATGAAAAAATTGTGAATGTCAACAAAATCGCTCAGCCGCTGGCGTCAAAGAAGTTGGCAAAGAAAGTCTACAAGCTCATCAAGAAGGCATCAAAGGAGCGTACAAAGAACATAATCAACGGTTTGAAGGACGTACAGACGAGAATCCGAAAGGGCGAACGAGGAATTACAATTTTTGCCGGTGACGTCTTTCCAGTCGACATTATTTGCCATTTACCAGCGGTGTGCGAGGAGAAAGACATTCAATATTGCTACACGCCGAGTCGACAGGACTTGGGCACAGCGATGGGAGTGAAGAGGGGCTCGATTGTTCTCATGATTCGCGAGAACGCCGACTATAAAGAATTGTACGACGAAGTCAAGGAGGAGCTCAAAGGACTCCCACATCCCTTC
Protein: 147 (aa)
MKADESSTKIKLEDNYDEKIVNVNKIAQPLASKKLAKKVYKLIKKASKERTKNIINGLKDVQTRIRKGERGITIFAGDVFPVDIICHLPAVCEEKDIQYCYTPSRQDLGTAMGVKRGSIVLMIRENADYKELYDEVKEELKGLPHPF
| Type | Start | End | Length |
| CDS |
11626 |
11674 |
49 |
| CDS |
11734 |
12125 |
392 |
| intron |
11675 |
11733 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001353199 |
GA18767 [Drosophila pseudoobscura pseudoobscura] ref|XP_002022268.1| GL24587 [Drosophila persimilis] gb|EAL30701.1| GA18767 [Drosophila pseudoobscura pseudoobscura] gb|EDW26272.1| GL24587 [Drosophila persimilis] |
7e-49 |
| InterPro |
IPR018492 |
Ribosomal protein L7Ae/L8/Nhp2 family |
|
| InterPro |
IPR004038 |
Ribosomal protein L7Ae/L30e/S12e/Gadd45 |
|
| Pfam |
PF01248.21 |
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
2.6e-21 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB14223-PA |
| D. melanogaster |
FBgn0029148 |
| A. aegypti |
AAEL003469 |
| D. plexippus |
DPOGS210276PA |
| T. castaneum |
TC012019 |
| N. vitripennis |
NV14043-PA |
| P. vanderplanki |
Pv.11994 |
| P. humanus |
PHUM457170-PA |
| C. quinquefasciatus |
CPIJ005033 |
| S. invicta |
SI2.2.0_14390 |
| A. gambiae |
AGAP012204 |
| H. sapiens |
ENSP00000274606 |
| H. melpomene |
HMEL008624-PA |
| M. musculus |
ENSMUSG00000001056 |
| B. mori |
BGIBMGA000029-TA |