MidgeBase gene description page [Pn.06531]
Outline
| Gene ID | Pn.06531 |
| Type | Protein coding gene |
| Scaffold | PnScaf5777 |
| Start | 10240 |
| End | 12202 |
| Direction | + |
Sequence
Transcript: 1905 (bp)
ATGGTTGGAAAGAAAAAAGCAAATCAGCTCGGCCGGTCGCTTATCAAGGACCGGTTCAGCAACACAAATAAGAGGAAGGTTGAAGAGAACATGCTTCATGTTGCCGACTTGAAAGACGGATACGATTGGGCAAAACTTAATCTTAATTCAGTAACAGAAGAGGATTCGTTTCAAGAATTTTTACGGAAAGCGGAGCTCGCTGGAACCGAATTTACAGCTGAGAAGTTGAACATCAAGTTTGTCAATCCCAAATCAACCGAGGGCCTGCTGTCAGAAAAGGAAATTAAGAATGTCGAGAAGATGATTAATGAACACAAGGATTCCTTGAAGATTCCGCGTCGTCCAAAGTGGACAAAGGACACAACACCGGAGGAATTGAACGCAAATGAAAACATGGCGTTTCTAGAATGGCGAAGAGAGCTGGCAGTGATAGCAGAAACCGAAGGCCTCGTAATCACTCCTTACGAAAAGAACTTGGAGTTTTGGAGACAATTGTGGCGAGTTATCGAGCGGTCAGATGTCGTCGTTCAAATTGTCGATGCTCGCAATCCGCTGCTATTTCGCAATTTAGACCTCGAGAAGTACGTTAAAGAGGTCAATCCCGATAAACAAAACATGATTTTGTTGAACAAAGCTGATTACCTGACTGACGAGCAACGAGCTATTTGGGCAGAATATTTCGACAATCAAAATCTGAGAGTTGCATTTTTCTCTGCCCTCGAACCGGAAGATAAGGAAGCCCAAATGAGCGAAGAGAGTTCCGATGACGAGGAAGGCAGCAGCGATGAGGAGGATGATGTTGAGGAGCAGTCGGCAAAGGATGCCATGTCATTGGAAGAGTTTAAGGAGAAGATTGATGAAATCAGCAATGGAATCGATGAAGCTGACAAAATTCTGAATAAAATCATCGAGGATCCAACGTCAGTCGTGAAGCAGGAAGAACCGGAGCTGCAAGCAGAGGCATGTGCAATCGAAAACACGAAAAATAACCCGAAGATATTGACACGAGAGGAGTTGATAGAGTTTTTCAAAAACATTCGTGCCTCGCATCCTCTTTGTGCTGAAAAAGAATCAATCACAATTGGTCTAATTGGATTTCCAAATGTCGGAAAGTCGAGCACAATAAACGCATTAATGCAGGCAAAGAAAGTCAGCGTGTCGGCTACTCCCGGTAAAACAAAGCATTTCCAGACACTTTTCCTCGAGCGAGATTTAATCTTGTGCGATTGCTGTGGATTGGTCATGCCGGCGCTTTGTTTCACCAAGGCTGATATGATTCTTAATGGAATTCTGCCAATTGACCAGATGCGCGACTACGTACCCCCAGTGAACACTCTGTGCACCTTTATTCCGAGGCATACGCTGGAAGAGAAATATGGAATTCTGATAACAAAACCTCTGGAAGGTGAGGATCAAAACAGACCGCCGCATTCTGAGGAGCTGCTGCTTGCATACGCGTACAACCGCGGATTCATGACGGCTAACGGTCAACCGGACCAATCGAGAGCAGCGAGAAAGGTACTGAAGGACTTCATCAACGGAAAATTGCTTTTCTGTAAGGCACCGCCCACACATGACCAGGCAGAGTTTCACAAATTCCCGGAAAGAACTTCCAAGGAAGTGACGCTGGAAAATTTGCCGCCTCGACAACAGCGATCGATGAAACTCGTTACGGGCGTGACAAGCAAGGACATTGACGACTTCTTCTTTCAAACTGAAAGTAACAAGTCGTACGTGAAGGGCAGAAATCTGATGAGTGAAAAACAGCAGATTCGAATGAATACGGTTGGCGCTCAAGCAGTTGGCTCTACGACTTCCATGTCAACTGTTGGAAAGAAAAGTAAGGCACCGAAGAAGGAAAAGAGGGAGAAACTGAGAAGAAAGTATGCACACTTGGATCAGCAT
Protein: 635 (aa)
MVGKKKANQLGRSLIKDRFSNTNKRKVEENMLHVADLKDGYDWAKLNLNSVTEEDSFQEFLRKAELAGTEFTAEKLNIKFVNPKSTEGLLSEKEIKNVEKMINEHKDSLKIPRRPKWTKDTTPEELNANENMAFLEWRRELAVIAETEGLVITPYEKNLEFWRQLWRVIERSDVVVQIVDARNPLLFRNLDLEKYVKEVNPDKQNMILLNKADYLTDEQRAIWAEYFDNQNLRVAFFSALEPEDKEAQMSEESSDDEEGSSDEEDDVEEQSAKDAMSLEEFKEKIDEISNGIDEADKILNKIIEDPTSVVKQEEPELQAEACAIENTKNNPKILTREELIEFFKNIRASHPLCAEKESITIGLIGFPNVGKSSTINALMQAKKVSVSATPGKTKHFQTLFLERDLILCDCCGLVMPALCFTKADMILNGILPIDQMRDYVPPVNTLCTFIPRHTLEEKYGILITKPLEGEDQNRPPHSEELLLAYAYNRGFMTANGQPDQSRAARKVLKDFINGKLLFCKAPPTHDQAEFHKFPERTSKEVTLENLPPRQQRSMKLVTGVTSKDIDDFFFQTESNKSYVKGRNLMSEKQQIRMNTVGAQAVGSTTSMSTVGKKSKAPKKEKREKLRRKYAHLDQH
| Type | Start | End | Length |
| CDS |
10240 |
10332 |
93 |
| CDS |
10388 |
12199 |
1812 |
| intron |
10333 |
10387 |
55 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR26342 |
hypothetical protein AND_07675 [Anopheles darlingi] |
0.0 |
| InterPro |
IPR006073 |
GTP binding domain |
|
| InterPro |
IPR023179 |
GTP-binding protein, orthogonal bundle domain |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
3.1e-16 |
| Pfam |
PF08477.8 |
Miro-like protein |
0.04 |
| Pfam |
PF00350.18 |
Dynamin family |
0.21 |
| Pfam |
PF02492.14 |
CobW/HypB/UreG, nucleotide-binding domain |
0.014 |
| Pfam |
PF02421.13 |
Ferrous iron transport protein B |
3.8e-08 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
0.045 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000022538 |
| C. quinquefasciatus |
CPIJ007588 |
| H. sapiens |
ENSP00000265245 |
| P. humanus |
PHUM129130-PA |
| N. vitripennis |
NV13357-PA |
| D. plexippus |
DPOGS214811PA |
| H. sapiens |
ENSP00000408264 |
| D. melanogaster |
FBgn0028274 |
| T. castaneum |
TC013937 |
| S. invicta |
SI2.2.0_06558 |
| A. gambiae |
AGAP011471 |
| A. mellifera |
GB12711-PA |
| H. melpomene |
HMEL017293-PA |
| P. vanderplanki |
Pv.03211 |
| B. mori |
BGIBMGA012046-TA |
| C. quinquefasciatus |
CPIJ019640 |
| A. aegypti |
AAEL014908 |
| A. aegypti |
AAEL006031 |