MidgeBase gene description page [Pn.06530]
Outline
| Gene ID | Pn.06530 |
| Type | Protein coding gene |
| Scaffold | PnScaf5777 |
| Start | 7547 |
| End | 9499 |
| Direction | + |
Sequence
Transcript: 1677 (bp)
ATGAAAGTTACTGTGCTGTACGACTTTACAAGCGAAATTGAAAATGAGCTATCTATAATTGCTGGCGAAGTTCTCACTGTTACGGATAAAGATGTTGGAAATGGATGGTGGGAGGGTATGAACAACAAAGGTCAAAGAGGAATTTTTCCAGCCTCATATGTTGAGGAGATTCAGACACCCGTTCGACCACCAGCACTAAGTGCGCAATATAGCAACGATTTTCCAGCAAACAACGTCACATCAACTGACGATCCTTGGAGTCAGCCGGCCATTATTGCACCATCCTACAATTCAAACCCTCCTCCACCGTCGGCTACCCAACAGAACCGCTACGACTATGCCAACGACGACTATGACTCAGACTTTGACGACGATGAGAACCCAGGTCGATATGCTGGCGGAAACACGGCCCTCGGCTCCTCGCAATCAAGTTATACCAATGCACAACTGCCACCTACGCCTGACGACGCGCAGTCGATGACGAGCAGTATGGCAGTCGCAAGAAAGTCGAAAATGTTCACAAAGTCGTCCGATTCCTACATTATGGGAACCGCAAATATAAATGTTTCGGAGAACGAGCAAATAAACATCTACCTAAACGATCAGGGCTTTTATAATTGGAAGCCGATAGAAGGACGTTATACCGTGACCGTTTCGTCACCGAAAATGGAGAGCAAATTTAAGGGCATTAAAAAATTTATCGCTTATCAACTGCTGCCGAGTTTCAATAATGAACCAGTATCACGACGCTACAAAAACTTTGACTGGCTGCACGGCATTCTGGTGGAGAAATTTTGTCTCATTCCGATTCCTCCCTTGCCTAACAAGCAAATCTCGGGACGATACGAGGAGGAATTCATTGAGCATCGACGTGCACAATTGCAGGAGTTCGTAGACTACATGTGTCGTCATCCAGTGCTGTCAAGGTGTGAAGTGTGGATGCACTTTTTGACTTGCAAGGATCAGAAGAAGTGGAAGGCCGGAAAAAGGACTGCCGAGAAAGACCCGCTTCAAGGACCAGCATTTTGTGCTGCCATCAGAGTCATTCCCGAAAAAGCTCTACTAGCCACAGTTGTTGACACTCAAATTGAATCTTGTAAAAACTTCACTGTTTCGATGGATGGGGCTTTGAAAATGTTGGAAGTCGCATGCCAGGATCAATCGTCGAAATATACGAATCTTTTCAAAAAGGACTATCAAAAGATGGGCGACTGCATGAGTGAATTGGCAAAGGCTCTCGACATAGACGAGAGACGCTTTAGTACTGGTTATTCTTTATCTCAAAGCGTAGGAAATACAGCAGGAATATACATTAAAATTGGCCGACTCTACGAAGAGCAAGCGAAGAGAGATTGGCAACCGTTTTGTGATAAACTCCATGTTTATCGTGGGATTTTAGGTTCATTTCCTGATATTTTATCGGTACATAAAAACGCTCAGCAAAAGAAGAAAGAGTGTGAGAAGCTTGCATTCGACCAGAAAATGTCAAATTTACAAATTCAGGAAGTCACTCGCAGGGTCGATGTTATGACAGTCGCTGTTTTGGCGGAGCAAGCTCACTTTCGTCAAGAAAGAGATGCGCATATGAGGGAAATGATGAAAAATTTACTCGGAGAGCAAATTTCCTTTTATCAGTCCGTCATTGGCCAACTTCAGCAAGCGCAACGCTTTTTCGAT
Protein: 559 (aa)
MKVTVLYDFTSEIENELSIIAGEVLTVTDKDVGNGWWEGMNNKGQRGIFPASYVEEIQTPVRPPALSAQYSNDFPANNVTSTDDPWSQPAIIAPSYNSNPPPPSATQQNRYDYANDDYDSDFDDDENPGRYAGGNTALGSSQSSYTNAQLPPTPDDAQSMTSSMAVARKSKMFTKSSDSYIMGTANINVSENEQINIYLNDQGFYNWKPIEGRYTVTVSSPKMESKFKGIKKFIAYQLLPSFNNEPVSRRYKNFDWLHGILVEKFCLIPIPPLPNKQISGRYEEEFIEHRRAQLQEFVDYMCRHPVLSRCEVWMHFLTCKDQKKWKAGKRTAEKDPLQGPAFCAAIRVIPEKALLATVVDTQIESCKNFTVSMDGALKMLEVACQDQSSKYTNLFKKDYQKMGDCMSELAKALDIDERRFSTGYSLSQSVGNTAGIYIKIGRLYEEQAKRDWQPFCDKLHVYRGILGSFPDILSVHKNAQQKKKECEKLAFDQKMSNLQIQEVTRRVDVMTVAVLAEQAHFRQERDAHMREMMKNLLGEQISFYQSVIGQLQQAQRFFD
| Type | Start | End | Length |
| CDS |
7547 |
7607 |
61 |
| CDS |
7741 |
8687 |
947 |
| CDS |
8751 |
8861 |
111 |
| CDS |
8939 |
9496 |
558 |
| intron |
7608 |
7740 |
133 |
| intron |
8688 |
8750 |
63 |
| intron |
8862 |
8938 |
77 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_320759 |
AGAP011751-PA [Anopheles gambiae str. PEST] gb|EAA00038.4| AGAP011751-PA [Anopheles gambiae str. PEST] |
1e-162 |
| InterPro |
IPR001452 |
Src homology-3 domain |
|
| InterPro |
IPR019497 |
Sorting nexin protein, WASP-binding domain |
|
| InterPro |
IPR001683 |
Phox homologous domain |
|
| Gene Ontology(BP) |
GO:0007154 |
cell communication |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0035091 |
phosphatidylinositol binding |
|
| Pfam |
PF07653.12 |
Variant SH3 domain |
2e-11 |
| Pfam |
PF10456.4 |
WASP-binding domain of Sorting nexin protein |
3.6e-58 |
| Pfam |
PF13620.1 |
Carboxypeptidase regulatory-like domain |
0.022 |
| Pfam |
PF00018.23 |
SH3 domain |
8e-13 |
| Pfam |
PF00787.19 |
PX domain |
1.8e-20 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000370817 |
| T. castaneum |
TC008241 |
| B. mori |
BGIBMGA001032-TA |
| A. gambiae |
AGAP011751 |
| N. vitripennis |
NV17275-PA |
| D. plexippus |
DPOGS200730PA |
| H. sapiens |
ENSP00000446165 |
| C. quinquefasciatus |
CPIJ010119 |
| H. sapiens |
ENSP00000317332 |
| M. musculus |
ENSMUSG00000002365 |
| H. sapiens |
ENSP00000342276 |
| P. humanus |
PHUM024330-PA |
| H. sapiens |
ENSP00000311427 |
| H. melpomene |
HMEL008952-PA |
| M. musculus |
ENSMUSG00000042364 |
| A. aegypti |
AAEL003416 |
| H. sapiens |
ENSP00000252631 |
| A. mellifera |
GB17209-PA |
| H. sapiens |
ENSP00000376024 |
| P. vanderplanki |
Pv.03210 |
| S. invicta |
SI2.2.0_10319 |
| D. melanogaster |
FBgn0040475 |
| M. musculus |
ENSMUSG00000032733 |