MidgeBase gene description page [Pn.06528]
Outline
| Gene ID | Pn.06528 |
| Type | Protein coding gene |
| Scaffold | PnScaf5777 |
| Start | 3143 |
| End | 6122 |
| Direction | - |
Sequence
Transcript: 2151 (bp)
ATGGCAGAAAGCTTGATAAAAATTGACATTGAATGGGGACACGAGAGATTAGTGCGCGCACAGCAAACAGTGGAATTACGGCCATACGATATTGAGTCATGGTCTATTCTTTTACGAGAAGCGCAATCAAGAAATTGCAATGAAGTGAGATCGCTTTATGAGTCGTTGGTATCAGTATTCCCTACTACTGCGCGCTACTGGAAGGTGTACATTGAACAAGAGATGAAATCCCGCAATTTTGAGAGAGTAGAAAAGCTCTTTCAAAGGTGCTTGGTGAAAATTCTCAACATTGATCTATGGAAGCTGTATTTGACGTATGTCAAGGAAAACAAGGCTGGTCTTAGCACACACAAAGAGAAGCTTGCTCAGGCATATGATTTTGCTTTGGAAAAAATCGGCATGGATCTTCATTCCTTCTCAATCTGGTCCGATTACATTCAGTTCTTAAAAAGTTTTGAACCGATAGGTAGTTTTGCGGAGAATCAAAAAATAACAGCCATCCGTAAAGTCTATCAAAAAGCAGTTCTTACACCAATCATTGGAATTGAAGTTTTGTGGAAAGAATACATTCAGTTCGAGCACAATATTAATCCTGTAATTTCGGAGAAAATGAGCTTGGAGCGATCGAGGGACTACATGAATGCGAGACGTGTCGCAAAGGAACTTGAAAACATTACTAAAGGACTCAACAGAAATCTCCCAGCTGTTCCACCAATTTTGACTAAAGAGGAATTTAAGCAGGCTGAGCTCTGGAGAAAGTTCATAAATTTTGAAAAATCAAATCCACTAAGGAGCGAAGACACTGCACTCGTTTCAAGACGAGTTATGTTCGCCACTGAGCAATGTTTGCTGGTGATGTGTCACCATCCATCATTCTGGATTATGGCCGCTCAATACTTGGATCAGACAGCAAAACACTTGACCGAAAAAGCCGATGTAAATGCAGCGAAAATTTTCTACGATGAAGTTTCCAACATTTTGGAGCGAGCAATCAACGGTGTTATGAATAAGAATGCACTGATGTATTTCACCTTTACCGATTTCGAGGAAGGCAGACTGAGATATGAGAAAGTGCACCAAATGTACAATAAATTCCTGGCAATACCTGATATCGATCCTACTTTAGCTTACGTTCAATACATGAAGTTCACGAGACGAGCTGAGGGAATCAAATCAGCTCGAGCGATTTTCAAGAGAGCACGTGAAGACGTTCGTTCGCGATATCACGTTTTCGTTGCTGCGGCATTGATGGAATACTATTGCAGCAAAGACAAGGACATTGCCTTCCGAATTTTCGAGTTGGGTTTGAAGCGTTTCGGTGGCAGTCCCGAGTACGTGATGTGTTATATCGATTATTTGTCTCACTTAAACGAGGATAACAACACGAGAGTTCTTTTTGAACGCGTGTTGTCTTCGGGAGGATTGACAAATCAATTGTCTGTGCAGATTTGGAACAAATTTCTCGAGTTTGAGTCAAATATTGGCGACTTATCGTCGATTGTTAAGGTGGAAAGACGTCGAAGTGCTGTTTTAGAGAATTTGAAGGAGTACGAAGGCAAAGAGACAGCTCAATTGATTGATCGCTACAAGTTCTTGGATCTTTTTCCGTGCACACAACCGGAGTTGAAGTCAGTTGGATATCATGAAATATCTTCACTCAGCGGAGGACAAAAAGTTGTTCAGCAGCATCAAGAGGAAGAAGAGTCGCAGAAAGTTTTGCCTCGGCCCGACTTTAATCAAATGATTCCGTTCAAACCAAAGCCAAACACTTATCCTGGCGAACATCCCATGGGAGGAGGGACTTTTCCTCAGCCACCTGCTCTCGCTGCCCTTTGCGCTTCGCTACCGCCGCCAGTCTGCTTCCGAGGTCCCTTTGTTTCCGTCGACAAGCTCATTGACGTCTTCAACCGAATTAAAATTGATGCGCCAGTTCCTGTAGCCGAAAATGGCTTAGAAACAAAATTGTTTGACTTGGCGAAATCCGTTCACTGGATCGTCGACGAAAGTCATCAATACTCTAACGAAGGCATCAAGCGACGAAGAATTTTACCGGGTGGCGGCGACGATTCCGATGATGAAACAAACAACAATTCGGCTAATCCACCTGTTAACGACATTTACCGCCTCCGACAGCAGAAGAAGTTCAACAAA
Protein: 717 (aa)
MAESLIKIDIEWGHERLVRAQQTVELRPYDIESWSILLREAQSRNCNEVRSLYESLVSVFPTTARYWKVYIEQEMKSRNFERVEKLFQRCLVKILNIDLWKLYLTYVKENKAGLSTHKEKLAQAYDFALEKIGMDLHSFSIWSDYIQFLKSFEPIGSFAENQKITAIRKVYQKAVLTPIIGIEVLWKEYIQFEHNINPVISEKMSLERSRDYMNARRVAKELENITKGLNRNLPAVPPILTKEEFKQAELWRKFINFEKSNPLRSEDTALVSRRVMFATEQCLLVMCHHPSFWIMAAQYLDQTAKHLTEKADVNAAKIFYDEVSNILERAINGVMNKNALMYFTFTDFEEGRLRYEKVHQMYNKFLAIPDIDPTLAYVQYMKFTRRAEGIKSARAIFKRAREDVRSRYHVFVAAALMEYYCSKDKDIAFRIFELGLKRFGGSPEYVMCYIDYLSHLNEDNNTRVLFERVLSSGGLTNQLSVQIWNKFLEFESNIGDLSSIVKVERRRSAVLENLKEYEGKETAQLIDRYKFLDLFPCTQPELKSVGYHEISSLSGGQKVVQQHQEEEESQKVLPRPDFNQMIPFKPKPNTYPGEHPMGGGTFPQPPALAALCASLPPPVCFRGPFVSVDKLIDVFNRIKIDAPVPVAENGLETKLFDLAKSVHWIVDESHQYSNEGIKRRRILPGGGDDSDDETNNNSANPPVNDIYRLRQQKKFNK
| Type | Start | End | Length |
| CDS |
3146 |
3372 |
227 |
| CDS |
3433 |
4231 |
799 |
| CDS |
4301 |
4492 |
192 |
| CDS |
4920 |
5111 |
192 |
| CDS |
5172 |
5559 |
388 |
| CDS |
5620 |
5942 |
323 |
| CDS |
6093 |
6122 |
30 |
| intron |
3373 |
3432 |
60 |
| intron |
4232 |
4300 |
69 |
| intron |
4493 |
4919 |
427 |
| intron |
5112 |
5171 |
60 |
| intron |
5560 |
5619 |
60 |
| intron |
5943 |
6092 |
150 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651356 |
cleavage stimulation factor [Aedes aegypti] gb|EAT42772.1| cleavage stimulation factor [Aedes aegypti] |
0.0 |
| InterPro |
IPR003107 |
RNA-processing protein, HAT helix |
|
| InterPro |
IPR008847 |
Suppressor of forked |
|
| Gene Ontology(BP) |
GO:0006397 |
mRNA processing |
|
| Gene Ontology(BP) |
GO:0006396 |
RNA processing |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Pfam |
PF08424.5 |
NRDE-2, necessary for RNA interference |
0.00011 |
| Pfam |
PF03556.10 |
Cullin binding |
0.024 |
| Pfam |
PF05843.9 |
Suppressor of forked protein (Suf) |
9.6e-83 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP003019 |
| M. musculus |
ENSMUSG00000027176 |
| D. melanogaster |
FBgn0003559 |
| T. castaneum |
TC015727 |
| P. humanus |
PHUM423840-PA |
| H. melpomene |
HMEL003740-PA |
| A. aegypti |
AAEL005719 |
| B. mori |
BGIBMGA011133-TA |
| D. plexippus |
DPOGS204962PA |
| P. vanderplanki |
Pv.10574 |
| A. mellifera |
GB18168-PA |
| C. quinquefasciatus |
CPIJ003799 |
| N. vitripennis |
NV15357-PA |
| S. invicta |
SI2.2.0_11185 |
| H. sapiens |
ENSP00000315791 |