MidgeBase gene description page [Pn.06500]
Outline
| Gene ID | Pn.06500 |
| Type | Protein coding gene |
| Scaffold | PnScaf5768 |
| Start | 103 |
| End | 1344 |
| Direction | + |
Sequence
Transcript: 897 (bp)
ATGAACCTGCACGTGGGAACCCTCGGCGTCATCACAAATGTGGTGGTGAAGCTACATAAGAAGCCAGAGATTCGTCGCTACGGCGCAATCTTCTTCCCTGACTTTGAAACTGGAATGAAGTTTATGTACGACATGAGTAAAATTAAAAACAGGCCGGCAAGCTTGAGGCTTGTTGACAACGTGCATTTTCAGTTTGGCAGAGCATTAAACTTTAACAACCTCTTAGGCCACTACCTCGATAAAGTAAAGGTATATAGCCTGTCAACCTTACTGCGCTACGACTTGGAAAAGGTCTCAATAGCGAGCTATTTAATCGAGGGAAGCAAGAAGGATGTTCAAGCCATTGAAGCTGATCTGAAGAGAGAAGCCAAGAAGCGTTCTTGCGTGAATGTCGGTCCAAAGTATGGAATCAAAGCATATTCCACCACATTTTTTATTGGCTACAGCAGGGATCTCTACCTCAACATGGGATTTATTGTGGAAACCATGGAACCTAGTGTCGCGTGGAGCAACTGCCAGTCGATGATGGACGCTGTGGGAAAGGCCTGGGACGAGGAGATTCAAAAAAGGAAGATCTTTGGGTTTATCGCGAAGAGATTTTCGCAAATTTACAACGACGGAGCGTGCATTTACTACTACTATGGATTTAAAACGACAGACGATAAAGACCAGCTCCAGACGCTTGCAGAGCTGTCGAAAGTTTTGCATAAAACTGTTTTAGACGCTGGCGGAAGTTTGTCGCACCATCATGGCGTCGGAAAGAAAAATTCAGATTTCTACTCAACATCTGTATCGCGTGTCGGCGTCGACGTGTTTCGCGCAATTAAGAGCAAAATCGATCCGAACAACGTTTTCGATGCAGGAAATTTCGTAGAAGATAATTTCGGTGCAAAATTG
Protein: 299 (aa)
MNLHVGTLGVITNVVVKLHKKPEIRRYGAIFFPDFETGMKFMYDMSKIKNRPASLRLVDNVHFQFGRALNFNNLLGHYLDKVKVYSLSTLLRYDLEKVSIASYLIEGSKKDVQAIEADLKREAKKRSCVNVGPKYGIKAYSTTFFIGYSRDLYLNMGFIVETMEPSVAWSNCQSMMDAVGKAWDEEIQKRKIFGFIAKRFSQIYNDGACIYYYYGFKTTDDKDQLQTLAELSKVLHKTVLDAGGSLSHHHGVGKKNSDFYSTSVSRVGVDVFRAIKSKIDPNNVFDAGNFVEDNFGAKL
| Type | Start | End | Length |
| CDS |
103 |
118 |
16 |
| CDS |
350 |
783 |
434 |
| CDS |
840 |
1127 |
288 |
| CDS |
1183 |
1341 |
159 |
| intron |
119 |
349 |
231 |
| intron |
784 |
839 |
56 |
| intron |
1128 |
1182 |
55 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850056 |
alkyldihydroxyacetonephosphate synthase [Culex quinquefasciatus] gb|EDS31364.1| alkyldihydroxyacetonephosphate synthase [Culex quinquefasciatus] |
8e-55 |
| InterPro |
IPR025650 |
Alkyldihydroxyacetonephosphate synthase |
|
| InterPro |
IPR004113 |
FAD-linked oxidase, C-terminal |
|
| InterPro |
IPR016164 |
FAD-linked oxidase-like, C-terminal |
|
| Gene Ontology(BP) |
GO:0008610 |
lipid biosynthetic process |
|
| Gene Ontology(MF) |
GO:0008609 |
alkylglycerone-phosphate synthase activity |
|
| Gene Ontology(MF) |
GO:0050660 |
flavin adenine dinucleotide binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF08031.7 |
Berberine and berberine like |
0.024 |
| Pfam |
PF02913.14 |
FAD linked oxidases, C-terminal domain |
3.9e-30 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes