MidgeBase gene description page [Pn.06466]
Outline
| Gene ID | Pn.06466 |
| Type | Protein coding gene |
| Scaffold | PnScaf5744 |
| Start | 3081 |
| End | 5823 |
| Direction | + |
Sequence
Transcript: 1356 (bp)
ATGATGCCTGTATTAGAAATATCTGTTCATCAAACAATAAAATATGAGGATTCGTCACCAATTTTAAAGCGATATCACTTCCCAAGTTCAACAATAAACCCTAGATGTCTTAGAACATGCCATGGATCGCCATTCCTAGTTCGTGATCCAAAAACATGCGACTGTGTTTGTTCGAATGTCAGGGCGTGTGATAAAGCCATCCAATATTGGGATGACTACGAATGCAATTGCGAGTGCCTTAGATCCAGTTCAAAATGCTCTGCCGGCCAAACTTGGGACAAGAATACGTGTCAGTGCGCTTGTCCTAATGTTACTTGCAATGCCAATCAGTACTTGGACAAATCATGCTGCAAGTGCAAATGTAGCGAAGACTGTACGAACAGCTTCTTGTTCAGACAAGATCCGCAGACTTGTGCGTGCAACTGCAGGGAGGTAAAGACCTGCGATGAGGGTGAAGTGTTCGACACAAGTGACTGCTCATGCAAGTGCAATCGTACCTGTCCTAATAATCAGTTCCTCGACAAGTCAGAATGCAGATGTAAATGCAAGGAGGGATGCTCGTGTCCGATCAAATTCAAACAGGATCCGAAGACATGCGAATGTAGCTGCCGAAATGTTAAGAAATGCAAGCCTTTTGAATTCTTTGACACAACTGACTGCACTTGCAAGTGCAAGGAAACGTGTGGCTCCAACCAATACCAAGACCAGGATACCTGCGAGTGTATTTGCAAGGAAGGCTGCCGTCGTCCACTGCTCTTTGTTCAGGACCCGAAGACTTGTGACTGCTCCTGCCGAACAGTAAGAACCTGCCACGCTACGGAAATATTTGACCCAATCGACTGTGCCTGCAAGTGTAAACTTTCTGCAAAGGACGCCGGTCCAAAGCAGGTCTTCGTGCCCGAGAAGTGTGCTATCGAATGCGATCCTAACATCGACTGCGGCTGCAAGAAGGAAGCCGTTTTACCGTCATGTGACTGCAAGTGCAAGGACGGATGTGGCGACTCTAGCAAATACGTTCAGAACGTTACCACGTGCGCTTGTCAGTGCATCAACGACGGAAAATGCGGAGTAGGACAAGAGCTAAATGACCTCTGCGAATGCGTCTGCGCACCACCAAAGGACCGCACTTGCATCGCGCCCCAGCTCTGGAGCACAGACACTTGTCGCTGCACATGCCCGGCCAAGACTTGTGCAGGCAAGCAGGAACTGAACGCCGCCTCCTGTGACTGTGAGTGCCCCGATCGCGACGAACGCGAGAAGTGCCTGAAAGGAATCATCTTCAATGTTTGGAACAAGACCACGTGTAGTTGCGAGTGGAAGTGGGGCCCGCTTGGCGTCCTCTTCCCATTCCTTAAC
Protein: 452 (aa)
MMPVLEISVHQTIKYEDSSPILKRYHFPSSTINPRCLRTCHGSPFLVRDPKTCDCVCSNVRACDKAIQYWDDYECNCECLRSSSKCSAGQTWDKNTCQCACPNVTCNANQYLDKSCCKCKCSEDCTNSFLFRQDPQTCACNCREVKTCDEGEVFDTSDCSCKCNRTCPNNQFLDKSECRCKCKEGCSCPIKFKQDPKTCECSCRNVKKCKPFEFFDTTDCTCKCKETCGSNQYQDQDTCECICKEGCRRPLLFVQDPKTCDCSCRTVRTCHATEIFDPIDCACKCKLSAKDAGPKQVFVPEKCAIECDPNIDCGCKKEAVLPSCDCKCKDGCGDSSKYVQNVTTCACQCINDGKCGVGQELNDLCECVCAPPKDRTCIAPQLWSTDTCRCTCPAKTCAGKQELNAASCDCECPDRDEREKCLKGIIFNVWNKTTCSCEWKWGPLGVLFPFLN
| Type | Start | End | Length |
| CDS |
3081 |
3083 |
3 |
| CDS |
3408 |
3486 |
79 |
| CDS |
3794 |
3917 |
124 |
| CDS |
3986 |
4237 |
252 |
| CDS |
4364 |
4546 |
183 |
| CDS |
4684 |
4866 |
183 |
| CDS |
5012 |
5266 |
255 |
| CDS |
5544 |
5820 |
277 |
| intron |
3084 |
3407 |
324 |
| intron |
3487 |
3793 |
307 |
| intron |
3918 |
3985 |
68 |
| intron |
4238 |
4363 |
126 |
| intron |
4547 |
4683 |
137 |
| intron |
4867 |
5011 |
145 |
| intron |
5267 |
5543 |
277 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
Q03376 |
RecName: Full=Balbiani ring protein 3; Flags: Precursor emb|CAA36506.1| balbiani ring 3 (BR3) [Chironomus tentans] |
5e-24 |
| InterPro |
IPR004153 |
CXCXC repeat |
|
| Pfam |
PF03128.9 |
CXCXC repeat |
0.00015 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.07489 |