MidgeBase gene description page [Pn.06436]
Outline
| Gene ID | Pn.06436 |
| Type | Protein coding gene |
| Scaffold | PnScaf5728 |
| Start | 15485 |
| End | 16921 |
| Direction | + |
Sequence
Transcript: 1230 (bp)
ATGAATTTTTTGAGAAAATTAACGACTGTTAAGCATATCATCAAAACATCAGCGATAACGTCACGAAACAGCTCGATTTACTCGCCATTAACGGTGCTGTCCGACGATGAACTCGCAATGAAAGAAGCATTTGCCAAATTCGCTCGCGAGCAGATCGCACCGAAAGTCAAAGAGATGGAGAGAAATCACTTACAGGATCCCGACTTACTGAAAGGACTCTTTGAAAACGGTTTTATGGGCATTGAGATTCCCGAAGAGTACAACGGAAGTGGATCGAATTTCATGAGCGCGATCTTGGCTGTTGAGGAGATCAGCAAGGTCGACTCTTCGATAGCCATCTTGGTCGACATCCAGAACACGCTGGTCAATGCTCTCATCACTAAGCTAGGCACCCCGGAGCAGAAGAAAAAATATTTAACAAAGCTCGCGACCTCGAGCGTTGGTAGTTTTGCTCTTTCCGAGCCCTCGTCTGGATCAGACGCTTTTGCCATGAAAACCACAGCGAAAAAAGACGGCAACAACTACGTTTTGAACGGCGCAAAGATGTGGATTTCCAACTCGGATGTTGCGGAGATTTTCCTTTTGATGGCCAACGCTGATCCGTCCAAAGGCTACAAGGGAATAACGACCTTCATTTTAGAGAAGGGGATGGAGGGCCTGTCGATTGGCAAGAAGGAAGACAAGCTGGGATTATGTGCAAGTGGCACATGCATGATTCACTTGGACAATGTTCGGGTGCCAGAGGAGAACATTTTAGGAGAATTCGGAAAAGGATATGCATACGCGGCAGGCTTCCTCAATGAGGGAAGGATCGGAATTGGTGCGCAAATGGTTGGACTGGCTCAAGGCTGTTTCGATGCCACAATCCCGTACCTTCTCGAGCGAAAGCAGTTCGGCAAGGAGATATTCGATTTTCAAGGCATGCAATTCCAAATCGCTGAGACAGCAACTCAGATTGAGGCCGGCAGACTGCTGACCTATAATGCCGCTCGCTTGCAGGAAGCTGGTAAACCATTTTTGAAGGAGGCGGCCATGTGCAAATTGTTTTGCTCTCGAATGGCACAACAAGTCACAATTAACTGCATCGATTGGATGGGAGGCGTTGGTTTCACAAAAGATTTTCCTCACGAGAAGTTCTATCGCGACGTGAAGGCTGGCTCTATTTACGAAGGAACGTCAAACATCCAAATGAGCAGCATTGCCAAAATAATTAGAAAGGAATACTCCTCA
Protein: 410 (aa)
MNFLRKLTTVKHIIKTSAITSRNSSIYSPLTVLSDDELAMKEAFAKFAREQIAPKVKEMERNHLQDPDLLKGLFENGFMGIEIPEEYNGSGSNFMSAILAVEEISKVDSSIAILVDIQNTLVNALITKLGTPEQKKKYLTKLATSSVGSFALSEPSSGSDAFAMKTTAKKDGNNYVLNGAKMWISNSDVAEIFLLMANADPSKGYKGITTFILEKGMEGLSIGKKEDKLGLCASGTCMIHLDNVRVPEENILGEFGKGYAYAAGFLNEGRIGIGAQMVGLAQGCFDATIPYLLERKQFGKEIFDFQGMQFQIAETATQIEAGRLLTYNAARLQEAGKPFLKEAAMCKLFCSRMAQQVTINCIDWMGGVGFTKDFPHEKFYRDVKAGSIYEGTSNIQMSSIAKIIRKEYSS
| Type | Start | End | Length |
| CDS |
15485 |
15520 |
36 |
| CDS |
15580 |
15673 |
94 |
| CDS |
15766 |
15953 |
188 |
| CDS |
16007 |
16918 |
912 |
| intron |
15521 |
15579 |
59 |
| intron |
15674 |
15765 |
92 |
| intron |
15954 |
16006 |
53 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR29779 |
hypothetical protein AND_01014 [Anopheles darlingi] |
1e-166 |
| InterPro |
IPR006092 |
Acyl-CoA dehydrogenase, N-terminal |
|
| InterPro |
IPR006090 |
Acyl-CoA oxidase/dehydrogenase, type 1 |
|
| InterPro |
IPR013786 |
Acyl-CoA dehydrogenase/oxidase, N-terminal |
|
| InterPro |
IPR009100 |
Acyl-CoA dehydrogenase/oxidase |
|
| InterPro |
IPR006091 |
Acyl-CoA oxidase/dehydrogenase, central domain |
|
| InterPro |
IPR006089 |
Acyl-CoA dehydrogenase, conserved site |
|
| InterPro |
IPR009075 |
Acyl-CoA dehydrogenase/oxidase C-terminal |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
|
| Gene Ontology(MF) |
GO:0050660 |
flavin adenine dinucleotide binding |
|
| Gene Ontology(MF) |
GO:0003995 |
acyl-CoA dehydrogenase activity |
|
| Pfam |
PF00441.19 |
Acyl-CoA dehydrogenase, C-terminal domain |
1.3e-46 |
| Pfam |
PF02771.11 |
Acyl-CoA dehydrogenase, N-terminal domain |
1e-26 |
| Pfam |
PF02770.14 |
Acyl-CoA dehydrogenase, middle domain |
1.6e-19 |
| Pfam |
PF08028.6 |
Acyl-CoA dehydrogenase, C-terminal domain |
1.9e-20 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000357873 |
| P. humanus |
PHUM226870-PA |
| B. mori |
BGIBMGA011308-TA |
| P. vanderplanki |
Pv.00935 |
| T. castaneum |
TC005123 |
| N. vitripennis |
NV18020-PA |
| A. aegypti |
AAEL007555 |
| S. invicta |
SI2.2.0_09928 |
| A. gambiae |
AGAP009783 |
| T. castaneum |
TC005122 |
| H. sapiens |
ENSP00000357862 |
| P. vanderplanki |
Pv.00934 |
| N. vitripennis |
NV13885-PA |
| M. musculus |
ENSMUSG00000030861 |
| D. plexippus |
DPOGS211032PA |
| S. invicta |
SI2.2.0_11461 |
| D. melanogaster |
FBgn0036824 |
| C. quinquefasciatus |
CPIJ009148 |
| A. mellifera |
GB11251-PA |