MidgeBase gene description page [Pn.06395]
Outline
Link to gbrowse
| Gene ID | Pn.06395 |
|---|---|
| Type | Protein coding gene |
| Scaffold | PnScaf5702 |
| Start | 25475 |
| End | 27809 |
| Direction | + |
Sequence
Transcript: 1653 (bp)
ATGTCGATGTTATCAGCACGTTTCGCTGCCTCGGTGGCTCGCAACCTTCCAAGATCAGCACAACAGGTTGCTAGAGTTGTTGTGCCAGCTTCACAGATTGCAGCCCGCAAGATCCATGTCTCGGCTCCAGCAAAGGGCGCTGAAATCAGCTCAATTCTCGAAGAGAGAATCATGGGTGCTGCACCGAAAGCCGATTTGGAGGAAACTGGACGTGTCTTGAGCATCGGTGATGGTATTGCTCGTGTCTACGGATTGAAGAACATCCAAGCCGACGAGATGGTGGAATTCTCATCAGGATTGAAGGGTATGGCTCTTAACTTGGAACCGGACAACGTTGGTGTTGTCGTCTTCGGTAACGATAAGCTCATCCGTGAGGGAGATATTGTCAAGCGTACCGGCGCCATTGTCGACGTTCCAGTCGGTGATGAGCTCTTGGGCCGTGTCGTTGACGCTTTGGGTAACACCATTGACGGCAAGGGAGAGATCAAATCCCCGCAACGCTTGCGTGTCGGAATCAAGGCCCCTGGCATCATTCCTCGTGTCTCTGTCCGCGAGCCCATGCAGACCGGTATCAAGGCCGTCGACTCGTTGGTACCAATCGGACGTGGTCAACGTGAGTTGATTATTGGAGACAGACAGACCGGAAAAACTGCTTTGGCCATTGATACAATCATCAACCAGAAGCGTTTCAACGACGGTCAAGATGAGTCAAAGAAATTGTACTGCATCTACGTCGCCATCGGTCAAAAGCGTTCGACTGTCGCCCAGATCGTCAAGCGCTTGAGCGATGCCGGTGCTATGGAATACACCATCATTGTCTCAGCCACTGCCTCAGATGCTGCCCCTCTGCAATACTTGGCTCCTTACTCAGGCTGCGCCATGGGTGAATACTTCCGTGACAACGGCAAACACGCTCTCATCATCTATGATGACTTGTCAAAGCAAGCCGTGGCCTACCGTCAAATGTCACTTCTGTTGCGTCGTCCACCAGGTCGTGAGGCCTACCCTGGTGATGTCTTCTACTTGCATAGCCGTTTGTTGGAACGTGCAGCCAAAATGTCGCCTGCCCATGGCGGTGGCTCATTGACCGCCTTGCCAGTTATTGAGACACAAGCTGGTGATGTCTCAGCTTACATTCCAACCAATGTCATCTCAATTACTGACGGTCAAATTTTCTTGGAAACCGAGTTGTTCTACAAGGGTATTCGTCCAGCTATTAACGTCGGTTTGTCTGTGTCACGTGTCGGATCAGCTGCCCAAACCAGAGCCATGAAACAGGTCGCCGGTTCAATGAAATTGGAGCTTGCCCAATACCGTGAGGTTGCTGCCTTCGCCCAATTCGGTTCAGATCTCGATGCTGCCACACAACAACTCTTGAACCGTGGTGTCCGCTTGACAGAATTGTTGAAGCAAGGTCAATACGTTCCAATGGCTATCGAAGAACAAGTTGCAGTCATTTACTGCGGTGTCCGCGGTCACTTGGACAAGATGGAACCATCAAAGATCACAGCATTCGAAAAGGAATTCTTGGCTCACATTAAGACAAACGAGAAGGCATTGTTGCAACAAATTGCCAGCGAAGGAAAGATCAGTGACGAAGTTGATGCTAAGCTTAAATCGATTGTAACCAGTTTCCTCTCGACATACAGTGGA
Protein: 551 (aa)
MSMLSARFAASVARNLPRSAQQVARVVVPASQIAARKIHVSAPAKGAEISSILEERIMGAAPKADLEETGRVLSIGDGIARVYGLKNIQADEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIREGDIVKRTGAIVDVPVGDELLGRVVDALGNTIDGKGEIKSPQRLRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKRFNDGQDESKKLYCIYVAIGQKRSTVAQIVKRLSDAGAMEYTIIVSATASDAAPLQYLAPYSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSPAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKMEPSKITAFEKEFLAHIKTNEKALLQQIASEGKISDEVDAKLKSIVTSFLSTYSG
| Type | Start | End | Length |
|---|---|---|---|
| CDS | 25475 | 25540 | 66 |
| CDS | 25936 | 26172 | 237 |
| CDS | 26286 | 26626 | 341 |
| CDS | 26716 | 27349 | 634 |
| CDS | 27432 | 27806 | 375 |
| intron | 25541 | 25935 | 395 |
| intron | 26173 | 26285 | 113 |
| intron | 26627 | 26715 | 89 |
| intron | 27350 | 27431 | 82 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| BLASTP/NCBI-nr | EFR19222 | hypothetical protein AND_22861 [Anopheles darlingi] | 0.0 |
| InterPro | IPR000793 | ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal | |
| InterPro | IPR005294 | ATPase, F1 complex, alpha subunit | |
| InterPro | IPR020003 | ATPase, alpha/beta subunit, nucleotide-binding domain, active site | |
| InterPro | IPR004100 | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal | |
| InterPro | IPR018118 | ATPase, F1/A1 complex, alpha/beta subunit, N-terminal | |
| InterPro | IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | |
| InterPro | IPR023366 | ATPase, F1/A1 complex, alpha subunit, N-terminal | |
| Gene Ontology(BP) | GO:0046034 | ATP metabolic process | |
| Gene Ontology(BP) | GO:0015986 | ATP synthesis coupled proton transport | |
| Gene Ontology(BP) | GO:0015991 | ATP hydrolysis coupled proton transport | |
| Gene Ontology(BP) | GO:0015992 | proton transport | |
| Gene Ontology(CC) | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | |
| Gene Ontology(CC) | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | |
| Gene Ontology(CC) | GO:0016469 | proton-transporting two-sector ATPase complex | |
| Gene Ontology(MF) | GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | |
| Gene Ontology(MF) | GO:0005524 | ATP binding | |
| Gene Ontology(MF) | GO:0046961 | proton-transporting ATPase activity, rotational mechanism | |
| Gene Ontology(MF) | GO:0046933 | hydrogen ion transporting ATP synthase activity, rotational mechanism | |
| Pfam | PF06745.8 | KaiC | 0.031 |
| Pfam | PF00306.22 | ATP synthase alpha/beta chain, C terminal domain | 1e-26 |
| Pfam | PF00006.20 | ATP synthase alpha/beta family, nucleotide-binding domain | 7.6e-73 |
| Pfam | PF09378.5 | HAS barrel domain | 1.6e-05 |
| Pfam | PF13481.1 | AAA domain | 0.05 |
| Pfam | PF01325.14 | Iron dependent repressor, N-terminal DNA binding domain | 0.11 |
| Pfam | PF02874.18 | ATP synthase alpha/beta family, beta-barrel domain | 1.1e-19 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
|---|
Orthologous genes
| Species | Gene ID |
|---|---|
| D. melanogaster | FBgn0011211 |
| A. gambiae | AGAP005134 |
| H. sapiens | ENSP00000467037 |
| T. castaneum | TC008728 |
| H. melpomene | HMEL004163-PA |
| H. sapiens | ENSP00000381736 |
| P. humanus | PHUM289650-PA |
| B. mori | BGIBMGA001853-TA |
| H. sapiens | ENSP00000282050 |
| H. sapiens | ENSP00000440198 |
| S. invicta | SI2.2.0_08923 |
| C. quinquefasciatus | CPIJ002271 |
| H. sapiens | ENSP00000465477 |
| N. vitripennis | NV14491-PB |
| A. mellifera | GB14791-PA |
| A. aegypti | AAEL012175 |
| P. vanderplanki | Pv.01917 |
| N. vitripennis | NV14491-PA |
| D. plexippus | DPOGS210435PA |