MidgeBase gene description page [Pn.06366]
Outline
| Gene ID | Pn.06366 |
| Type | Protein coding gene |
| Scaffold | PnScaf5689 |
| Start | 2340 |
| End | 4612 |
| Direction | - |
Sequence
Transcript: 1920 (bp)
ATGAAATTTATTTTAATTATTTTGCTGGCCGTCAACTGCAGCACGCGTTCGCAGCTAATGGAGCGGCCGACAATTGCGCTCATCAATGAGTTTTACGATCGCCAGTGGTCGATGAGTTTTGTCGTGGACTCCACGCACCAGCAACTGCTCGAGAATGTGCTCAAGAACGTCGACCGGTGCCTCGTTCCGACGACGGTTGAGTCGCTGGCCAGCATCGGCACGGCCGCCAAATTCAAACGCCGGAATGTCATGATTTTCGTCGAAGACGACCGTGATTCGTTGTCGCAGCTCCTGGCCGCGCTAACAAGCAAAAGATTCCAGCTCAACGGCTTCTACACGTTCGTCATGAGGAGCGCGAGCGATGAGACTGCAGTTTGGCTGTTCGAGCAGCTGTGGCAGCGATTCATCTCGAACGCGAACATCTTGACAGCTGAACATGATCGCGTGCTGCTGAAAACCTTCATGCCCTTCACCGCGCGCCTCTGCTACGACCTCCGACCCGTAACCGTCAATGAGTTTGAGTTTTCGAGCCGACGATGGAGGAGCTCGGATTTTTTCCCGCAAAAATTCAAGAACTTTCACAACTGCACGCTGCGAGCCTCGACCTTCGAGTACCCACCGGCGGTGTTCAAAATACCATCCGAAGAAGAGGAAGGAGTTGCGCTCGACGGCAGTGACATCGAGCTCGTCGGCGGCCTCAGCAAAATCTTGAATTTTCACCTCAATCTTACGTACAGCGACACGCCCGGAGCCTCTGGCATGACCTACCAAAACGGCACGGTGACCGGCGTGAAAATTTCACTTCTCGCCAACGCCACCGACTTTCTCTTCGGCCTCTACTACACGACCTACCCGAATTGCCTCTACATGGGCTGCAGCCGGTCGTACTACGCGGTCTTCATGACGGTCGTAGTGCCGCAGGTCGATTTCACCTCGCTCGAGAAGTTTTTCGTGCCCTTCAAGCTTGACCTGTGGATCGCCATGATTGCCGTCATGCTCACCGCTGTGCTCGCCATCGCGCTGCTCCAGCGCCGATACCGGCAGTTCCGGAACTTTGTCATCGGCAGCAACGTCAGCGACTCCTACAACCAGCTGCTGACCGCCTTCATCGGCGGCTCCTCGCACAAACTTCCGCGACGAAATTTCGCTCGCTACTTGCTGATGACTTTCATCCTCTTCTGCCTCGTGATGCGCTCCGTCTATGTGGGCGGGCTGTTCAAGTTTTTGCAGTCGAACGAAAAGTTCGCGCCAATTAAGACGATCGAGGATTTGCTGGCGCGAGAGTACAAACTTTATGCACACTTTTACTTCGAGGACTACCTCGTGCGAATGGGCCTTGGAGAGAGCGTAGTTGTCATAAAGCCGAGCGAGGACGACTACTACAAGCAGAAAACCTTTGACCCAACATTTCGCGGTGGCTTTCTGATAACATCGGACGAGCTCATGTATCTCAACAAAATCAACGCTCAGAACTTCACATATCGCGTGGTCAACGACCATCTCTACACAGTCAGCAATGGCCTGCTTTTCCAGAACGACTCGTATCTGATTGATGCCTTCGACCGCGTCATCATCGAGCTGCAGTCGAATGGACTCATCAACTATTGGATAACAAAGTACATCGACGCGAGTTTCCTCAAACTCAAGAAATCGCCCCGACAGCCCGAGAAATTGACTCTCAGCCAACTGCTCGGATCGTTTCAGATGTGGCTGTGCGGAGTCGCTTGTGCAATTATAAGTTTCGCAATTGAGGTCATTTATAATAGATTTAAGGGAAACAAAGGGCGAGGAGTGCGAGGAGAGAAAAAGTTTCAAGCTCGAGATTATTTCTGCATCCTCTTTTATCGTTTCGTCAATCAGCAGCAAAAAATGAATGACGCTGAACGGAAAGCGAGAGGAGAGGAGGCGAAATTAAATATT
Protein: 640 (aa)
MKFILIILLAVNCSTRSQLMERPTIALINEFYDRQWSMSFVVDSTHQQLLENVLKNVDRCLVPTTVESLASIGTAAKFKRRNVMIFVEDDRDSLSQLLAALTSKRFQLNGFYTFVMRSASDETAVWLFEQLWQRFISNANILTAEHDRVLLKTFMPFTARLCYDLRPVTVNEFEFSSRRWRSSDFFPQKFKNFHNCTLRASTFEYPPAVFKIPSEEEEGVALDGSDIELVGGLSKILNFHLNLTYSDTPGASGMTYQNGTVTGVKISLLANATDFLFGLYYTTYPNCLYMGCSRSYYAVFMTVVVPQVDFTSLEKFFVPFKLDLWIAMIAVMLTAVLAIALLQRRYRQFRNFVIGSNVSDSYNQLLTAFIGGSSHKLPRRNFARYLLMTFILFCLVMRSVYVGGLFKFLQSNEKFAPIKTIEDLLAREYKLYAHFYFEDYLVRMGLGESVVVIKPSEDDYYKQKTFDPTFRGGFLITSDELMYLNKINAQNFTYRVVNDHLYTVSNGLLFQNDSYLIDAFDRVIIELQSNGLINYWITKYIDASFLKLKKSPRQPEKLTLSQLLGSFQMWLCGVACAIISFAIEVIYNRFKGNKGRGVRGEKKFQARDYFCILFYRFVNQQQKMNDAERKARGEEAKLNI
| Type | Start | End | Length |
| CDS |
2343 |
2916 |
574 |
| CDS |
3267 |
4612 |
1346 |
| intron |
2917 |
3266 |
350 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001649350 |
hypothetical protein AaeL_AAEL014687 [Aedes aegypti] gb|EAT33059.1| conserved hypothetical protein [Aedes aegypti] |
9e-52 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
1.1e-19 |
| Pfam |
PF03706.8 |
Uncharacterised protein family (UPF0104) |
0.047 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10187 |