MidgeBase gene description page [Pn.06308]
Outline
| Gene ID | Pn.06308 |
| Type | Protein coding gene |
| Scaffold | PnScaf5645 |
| Start | 26526 |
| End | 28105 |
| Direction | + |
Sequence
Transcript: 1044 (bp)
ATGTCGCAAAACGAGAGGGAGGAGCTCGACATGGCCGTGCCGACGAGCTTTGACGCCATGAGCAGCTATTACCGCGAAAACCTGAAGAAAATCCTAAACTCGAGCTCCACAATCAGCTCCTGTGAGTCACTGTCCTCGATGGACTCGATAAAGCGGGAGAAGAAGAAGATTGACGACGACGGATCGTCAACGGCGTCCGACTCGGACATGGAGGATTGCTCACAGATTTGCACAAGCGCCGCGCAAGTCGCCAAGGTCAACGACAATGAAAGCTCACCGTGTGCCTTATCTAGCTCTAATTTACAAAACAAACTGCACAACATAAACTCAGTGTCGATAAACAACTCGACCGGCGTCCACTTCGGCAACAAGACCTTCTACAACGGCCCGGTCACGATAAAGCAGATTGTGATAAACGAGGAGTACCTGAAGAGAAGGGACGACGGTGTCAGTAACAGAGCCTTTGAAGGCTCCTCGACCAACGTCAATGTCGACCGCAACGCTTGTGATAACGCCGAGAACGATGAACCGCCCGTTTTAATAACGAGAGATGAGTGGCAGGCGAAGCAGCCGAAAGAGGCGCTGACGAAATTAGATTTGCCGGTTAATAGAATTATAATTGCCCACACGGTCGGCGATGAGTGCTTCTCAAAGGAGGACTGCACGAAGATCGTTCAGGACATTCAAGACATGCACATGTTCACCGCTGCCTTCAACTTCTCGGACATCGCCTACAACTTCCTCATCGGCGGCGATGGGCTGGTGTTCGAGGGCAGGGGCTGGAAGGAGCAGGGCGCACACACGTCGGGCTACAATCGCGGGAGCATCGGCGTCGCATATATTGGCACTTTCATGACGAAAGTTCCATCTGATATGCAGCTCGATGCGGGGTTTCGCTTGTTCCGCGAGGGCGTCAACGTCGGCGCTCTCGTCGACGACTATCGCATTTACGGTGCGTCCCAACTGAGGACGACGGAGAGTCCGGGCCATGCCTTTTTTGACTTGATCAAAACATGGAGTCATTGGTCAGAGGAGATTATCTCA
Protein: 348 (aa)
MSQNEREELDMAVPTSFDAMSSYYRENLKKILNSSSTISSCESLSSMDSIKREKKKIDDDGSSTASDSDMEDCSQICTSAAQVAKVNDNESSPCALSSSNLQNKLHNINSVSINNSTGVHFGNKTFYNGPVTIKQIVINEEYLKRRDDGVSNRAFEGSSTNVNVDRNACDNAENDEPPVLITRDEWQAKQPKEALTKLDLPVNRIIIAHTVGDECFSKEDCTKIVQDIQDMHMFTAAFNFSDIAYNFLIGGDGLVFEGRGWKEQGAHTSGYNRGSIGVAYIGTFMTKVPSDMQLDAGFRLFREGVNVGALVDDYRIYGASQLRTTESPGHAFFDLIKTWSHWSEEIIS
| Type | Start | End | Length |
| CDS |
26526 |
26994 |
469 |
| CDS |
27210 |
27260 |
51 |
| CDS |
27516 |
27649 |
134 |
| CDS |
27713 |
28102 |
390 |
| intron |
26995 |
27209 |
215 |
| intron |
27261 |
27515 |
255 |
| intron |
27650 |
27712 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002007918 |
GI12108 [Drosophila mojavensis] gb|EDW18394.1| GI12108 [Drosophila mojavensis] |
6e-51 |
| InterPro |
IPR002502 |
N-acetylmuramoyl-L-alanine amidase domain |
|
| InterPro |
IPR015510 |
Peptidoglycan recognition protein |
|
| InterPro |
IPR006619 |
Peptidoglycan recognition protein family domain, metazoa/bacteria |
|
| Gene Ontology(BP) |
GO:0009253 |
peptidoglycan catabolic process |
|
| Gene Ontology(MF) |
GO:0008745 |
N-acetylmuramoyl-L-alanine amidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF12910.2 |
Antitoxin of toxin-antitoxin stability system N-terminal |
0.069 |
| Pfam |
PF01510.20 |
N-acetylmuramoyl-L-alanine amidase |
1.9e-17 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.11316 |
| Pn.06307 |
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB17188-PA |
| A. aegypti |
AAEL013112 |
| N. vitripennis |
NV17167-PA |
| H. melpomene |
HMEL013401-PA |
| N. vitripennis |
NV17164-PA |
| P. vanderplanki |
Pv.13885 |
| D. plexippus |
DPOGS200905PA |
| T. castaneum |
TC002790 |
| A. gambiae |
AGAP005203 |
| B. mori |
BGIBMGA000673-TA |
| N. vitripennis |
NV17166-PA |
| S. invicta |
SI2.2.0_14532 |
| D. melanogaster |
FBgn0035976 |
| A. aegypti |
AAEL014640 |
| M. musculus |
ENSMUSG00000030413 |
| A. aegypti |
AAEL003037 |
| C. quinquefasciatus |
CPIJ006561 |
| N. vitripennis |
NV17165-PA |
| P. vanderplanki |
Pv.17160 |
| C. quinquefasciatus |
CPIJ006560 |
| D. melanogaster |
FBgn0030695 |
| D. melanogaster |
FBgn0035806 |
| C. quinquefasciatus |
CPIJ802233 |
| D. melanogaster |
FBgn0035977 |
| P. vanderplanki |
Pv.17159 |
| T. castaneum |
TC010508 |
| N. vitripennis |
NV21641-PA |