MidgeBase gene description page [Pn.06307]
Outline
| Gene ID | Pn.06307 |
| Type | Protein coding gene |
| Scaffold | PnScaf5645 |
| Start | 24117 |
| End | 25785 |
| Direction | + |
Sequence
Transcript: 1185 (bp)
ATGCAACCGCCCAGTACAATCGAGTTTGATAATGCACAGCCTCCAAATAAAAGTGCACTAGACGCATATTATTGCGAAAATTTGTCGAAAATTCTGAAATCACCCTCAAAACCTGCCGACGAGGACGATGACTCACTCACGGCCTCCGACTCGGACTTGGAAGAGTGCTACAGTCAACGGCAGAAAAGCTCCACGCCTACAGATAAGAGCAGTGCGTCAGCAATCAGCGACAACATTCAGAACAAGCTGCAGAACATCCACTCGGTCGGAATTGGTTCATCGTCGGGCATACACTTTGGAACAAAGGCATTTTATCACGGCCCCGTCACGATAAAGCAAATTCTCGTGAGTGAAGACGACGCTCCGAGGAGAATATGCAGCGATGGTGTGATAAACAGAGGCTTCGACGGATGTTCGAGTGACATATGCGCAAACAACAAGAAACAAGTCGCCGAGTATGCCAAAGACAAGCGAAACGACAAACGCAGAGAGCGCGAGCAAGCGTATGCAAATGTCGACGAGAGAAAGAAGTTCATGAGAGTAGTCAAAGTGCTGCTTGTGTTTGTGGCATTGGTGTGTGTGCTGGCCGTTGTCGTGCCGCTCGCGCTGACTTTTTGCTCGTTTCAAGGAGGAGGTGGCGATGGCGGAGGCAAAGAGGAGCCGTTTTGCATGATCAGCAGAGACGAGTGGAATGCCGAGAAACCTTCGACCACTCTCAAGAAGCTGCAGCTGCCGATTGAAAGGCTCATCATTGCTCACACAGTCGACAATGGCTGCTTCACAAAGGTTGTAAAAGGACTCCGGGAGACATGCATCATGCGCGTGCAGAGCATTCAGAACTTTCACATGAGTTCTCGAGGCTTCTCCGACATCGGATACAACTTTCTGATTGGCGGCGACGGCAACGTCTACGAGGGCCGAGGGTGGCTCTTTCAGGGCGCACACACAGCATCTCAAAACAATGGAAGCATCGGAATTGCATTCGTAGGAACGTTTAACGACATCCTTCCCAATGACGCGGCGCTCAAAGCCGGTTTTCGACTCTTCGACGAAGGAGTCAAACAGAGGACACTCGCAGAGAATTATCGGATTTTTGGGGCGGCCGAGCTGAGCAATGTGGACAGTCCGGGAAGAACTTTTCTAGAACTCATCAAAACGTGGAAGCACTGGCATGGAAATGTGTCG
Protein: 395 (aa)
MQPPSTIEFDNAQPPNKSALDAYYCENLSKILKSPSKPADEDDDSLTASDSDLEECYSQRQKSSTPTDKSSASAISDNIQNKLQNIHSVGIGSSSGIHFGTKAFYHGPVTIKQILVSEDDAPRRICSDGVINRGFDGCSSDICANNKKQVAEYAKDKRNDKRREREQAYANVDERKKFMRVVKVLLVFVALVCVLAVVVPLALTFCSFQGGGGDGGGKEEPFCMISRDEWNAEKPSTTLKKLQLPIERLIIAHTVDNGCFTKVVKGLRETCIMRVQSIQNFHMSSRGFSDIGYNFLIGGDGNVYEGRGWLFQGAHTASQNNGSIGIAFVGTFNDILPNDAALKAGFRLFDEGVKQRTLAENYRIFGAAELSNVDSPGRTFLELIKTWKHWHGNVS
| Type | Start | End | Length |
| CDS |
24117 |
24525 |
409 |
| CDS |
24747 |
24968 |
222 |
| CDS |
25031 |
25203 |
173 |
| CDS |
25402 |
25782 |
381 |
| intron |
24526 |
24746 |
221 |
| intron |
24969 |
25030 |
62 |
| intron |
25204 |
25401 |
198 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ABC25065 |
peptidoglycan recognition protein LC [Glossina morsitans morsitans] |
2e-51 |
| InterPro |
IPR002502 |
N-acetylmuramoyl-L-alanine amidase domain |
|
| InterPro |
IPR015510 |
Peptidoglycan recognition protein |
|
| InterPro |
IPR006619 |
Peptidoglycan recognition protein family domain, metazoa/bacteria |
|
| Gene Ontology(BP) |
GO:0009253 |
peptidoglycan catabolic process |
|
| Gene Ontology(MF) |
GO:0008745 |
N-acetylmuramoyl-L-alanine amidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF11857.3 |
Domain of unknown function (DUF3377) |
0.054 |
| Pfam |
PF06024.7 |
Nucleopolyhedrovirus protein of unknown function (DUF912) |
0.16 |
| Pfam |
PF01510.20 |
N-acetylmuramoyl-L-alanine amidase |
8.2e-15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.06308 |
| Pn.11316 |
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB17188-PA |
| A. aegypti |
AAEL013112 |
| N. vitripennis |
NV17167-PA |
| H. melpomene |
HMEL013401-PA |
| N. vitripennis |
NV17164-PA |
| P. vanderplanki |
Pv.13885 |
| D. plexippus |
DPOGS200905PA |
| T. castaneum |
TC002790 |
| A. gambiae |
AGAP005203 |
| B. mori |
BGIBMGA000673-TA |
| N. vitripennis |
NV17166-PA |
| S. invicta |
SI2.2.0_14532 |
| D. melanogaster |
FBgn0035976 |
| A. aegypti |
AAEL014640 |
| M. musculus |
ENSMUSG00000030413 |
| A. aegypti |
AAEL003037 |
| C. quinquefasciatus |
CPIJ006561 |
| N. vitripennis |
NV17165-PA |
| P. vanderplanki |
Pv.17160 |
| C. quinquefasciatus |
CPIJ006560 |
| D. melanogaster |
FBgn0030695 |
| D. melanogaster |
FBgn0035806 |
| C. quinquefasciatus |
CPIJ802233 |
| D. melanogaster |
FBgn0035977 |
| P. vanderplanki |
Pv.17159 |
| T. castaneum |
TC010508 |
| N. vitripennis |
NV21641-PA |