MidgeBase gene description page [Pn.06300]
Outline
| Gene ID | Pn.06300 |
| Type | Protein coding gene |
| Scaffold | PnScaf5645 |
| Start | 8323 |
| End | 10565 |
| Direction | - |
Sequence
Transcript: 2025 (bp)
ATGGCAGATCCGAAAATTGAAGAAATTCTCGCTCCGTTGCGAGCTGCAGTGAAAGAGCAAGGAGATTTGGTTCGAAAGCTCAAAGCCGATGGCGCTCCGGAAATTGACCTTAAAAAGGCTGTCGTTGAGCTAAAAGCTCGCAAGAAGATTCTTGAGGACAAGGAGTTGAGTCTGGCGCCGCAAGTTGCCTCCTTTGATCGTGCAAAAATGGAAGATTTACTCAAAAGAAGATTCTTCTACGATCAAAGCTTTGCCATTTACGGAGGAGTAACTGGCCAATACGACTTTGGACCCATGGGATGCATGCTTAAAGCGAACATGCTCAACTTATGGCGACAATTCTTTGTTCTCGAAGAGCAAATGCTCGAGGTCGACTGCTCGATTCTCACTCCTGAGCCCGTTTTGAAGACGAGCGGACATGTCGACCGTTTTGCCGATTTGATGGTGAAAGATTCAAAGACTGGAGAATGCTTTAGATTGGATCACTTGATCAAGGCACATCTAGAGAAGCTGTCATCAGACAAGAAGGCAACACAGGAGCTTAAAGATGAGTGCGCCGACATTGTTGTGAAACTAGACGGCATGAACAAGGAAGAGATGGCCGCTGTGCTGAAAAAGTACAACATGAAGTCGCCGCTAACACAAAACGATCTCACGGAGCCCATCGAATTTAACTTGATGTTTGGAACGAGCATTGGACCAACTGGTCTAGTCAAGGGCTTCTTGCGTCCAGAAACGGCCCAAGGAATTTTCGTCAATTTCAAGCGCCTGCTCGAGTTCAATCAAGGTCGGTTGCCGTTTGCAGCGGCACAAATCGGAAATGCATTCCGCAATGAAATTTCTCCTCGTTCTGGCCTCATTCGTGTTCGAGAATTCACAATGGCAGAGATTGAGCATTTTTGTGATCCGAGTTTGAAGGACCATCCGAAATTTGTCGATGTCGCTGACTATGAGATGACGCTCTATTCTGCGTGCAACCAGATGGACGGAAAGAGCGCACAGCGCATCAAGATCGGAGATGCAGTAAAGACCGGTCTGGTGGCGAACGAAACTCTCGGATACTTCATGGCTCGCATTCAAATGTTCTTGATCAAGGTCGGAATTGTGCCTTCGCGCCTTCGCTTCAGACAGCACATGAACAACGAGATGGCTCATTACGCCTGCGACTGTTGGGACGCGGAATGTCTCACAAGCTACGGATGGATCGAATGTGTCGGCTGTGCTGATCGCTCTGCGTACGATTTGACTCAGCACACGAATGTGACTGGAGTGAGACTTACTGCCGAAAAGAAGCTGCCGGAGCCTAAGAATGTCGACTTCACTGAGGCCGTTCCGAACATGAAGGTCCTGGGAAAGGCCTTCAAAAAAGATGCAAAGGAAATCACGGAGCTCCTTGCAAAGTTGTCGATCGATGATCTTAAGAAGATGGGCGACGAACTCACGCAAAACAACTCCTATCAACTAAACAACTACACTCTCAACAGCGAAATGGTCGCCATCAAATCTGGAACCAAGACCATTCACGTTGAGGAGATTATTCCTTCTGTAATTGAGCCCTCCTTTGGGATCGGAAGGATAATGTACTCTCTTCTGGAGCATCGCTTCCAAATGCGCGACGGAGACGAGCAGCGCTGTTTCTTCTCGCTCCCGCCAATCGTTGCCCCACTGAAATGCTCTGTGCTGCCGTTGAGCAACAATCAGGAGTTCGTTCCGTTCATCAAGCAAATCTCGTCTGCACTGACGAGAGTCGATGTTTCGCACAAGGTGGACGACTCGAGCGGGTCAATTGGTCGTCGTTATGCTCGCACTGATGAAATCGCTATTGCGTACGGCATCACAATCGACTTCGATACGGTCAAAGATAAGACCGTCACGTTGAGAGAACGCGACACGATGACTCAAGTGAGAATCCCAATTGACGAAGTTGCTGAGGTCGTGAGAAACTTGTCGTATAGCAAAATTGAATGGGCAGATGTCACATCACAATATCCTAAGTTTGAGCAGCAGGAGTCGGGAGCTCCCAAG
Protein: 675 (aa)
MADPKIEEILAPLRAAVKEQGDLVRKLKADGAPEIDLKKAVVELKARKKILEDKELSLAPQVASFDRAKMEDLLKRRFFYDQSFAIYGGVTGQYDFGPMGCMLKANMLNLWRQFFVLEEQMLEVDCSILTPEPVLKTSGHVDRFADLMVKDSKTGECFRLDHLIKAHLEKLSSDKKATQELKDECADIVVKLDGMNKEEMAAVLKKYNMKSPLTQNDLTEPIEFNLMFGTSIGPTGLVKGFLRPETAQGIFVNFKRLLEFNQGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPSLKDHPKFVDVADYEMTLYSACNQMDGKSAQRIKIGDAVKTGLVANETLGYFMARIQMFLIKVGIVPSRLRFRQHMNNEMAHYACDCWDAECLTSYGWIECVGCADRSAYDLTQHTNVTGVRLTAEKKLPEPKNVDFTEAVPNMKVLGKAFKKDAKEITELLAKLSIDDLKKMGDELTQNNSYQLNNYTLNSEMVAIKSGTKTIHVEEIIPSVIEPSFGIGRIMYSLLEHRFQMRDGDEQRCFFSLPPIVAPLKCSVLPLSNNQEFVPFIKQISSALTRVDVSHKVDDSSGSIGRRYARTDEIAIAYGITIDFDTVKDKTVTLRERDTMTQVRIPIDEVAEVVRNLSYSKIEWADVTSQYPKFEQQESGAPK
| Type | Start | End | Length |
| CDS |
8326 |
8621 |
296 |
| CDS |
8686 |
10005 |
1320 |
| CDS |
10069 |
10417 |
349 |
| CDS |
10506 |
10565 |
60 |
| intron |
8622 |
8685 |
64 |
| intron |
10006 |
10068 |
63 |
| intron |
10418 |
10505 |
88 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001859192 |
glycyl-tRNA synthetase [Culex quinquefasciatus] gb|EDS35041.1| glycyl-tRNA synthetase [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR002314 |
Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain |
|
| InterPro |
IPR002315 |
Glycyl-tRNA synthetase, alpha2 dimer |
|
| InterPro |
IPR004154 |
Anticodon-binding |
|
| InterPro |
IPR009068 |
S15/NS1, RNA-binding |
|
| InterPro |
IPR000738 |
WHEP-TRS |
|
| InterPro |
IPR006195 |
Aminoacyl-tRNA synthetase, class II |
|
| Gene Ontology(BP) |
GO:0006426 |
glycyl-tRNA aminoacylation |
|
| Gene Ontology(BP) |
GO:0006418 |
tRNA aminoacylation for protein translation |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0004820 |
glycine-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0004812 |
aminoacyl-tRNA ligase activity |
|
| Pfam |
PF00458.15 |
WHEP-TRS domain |
2.9e-13 |
| Pfam |
PF03683.8 |
Uncharacterised protein family (UPF0175) |
0.0093 |
| Pfam |
PF00587.20 |
tRNA synthetase class II core domain (G, H, P, S and T) |
9.4e-67 |
| Pfam |
PF03129.15 |
Anticodon binding domain |
1.2e-23 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000373918 |
| P. humanus |
PHUM603210-PA |
| A. mellifera |
GB13467-PA |
| M. musculus |
ENSMUSG00000029777 |
| D. plexippus |
DPOGS208779PA |
| C. quinquefasciatus |
CPIJ801789 |
| A. aegypti |
AAEL005728 |
| N. vitripennis |
NV10221-PA |
| D. melanogaster |
FBgn0027088 |
| P. vanderplanki |
Pv.17518 |
| H. melpomene |
HMEL015431-PA |
| A. gambiae |
AGAP008604 |
| B. mori |
BGIBMGA007637-TA |
| T. castaneum |
TC013782 |
| S. invicta |
SI2.2.0_11422 |