MidgeBase gene description page [Pn.06294]
Outline
| Gene ID | Pn.06294 |
| Type | Protein coding gene |
| Scaffold | PnScaf5636 |
| Start | 58438 |
| End | 59732 |
| Direction | - |
Sequence
Transcript: 1218 (bp)
ATGGATCAGTTGAGCGATAATTTCGAGAGAATCAGCATCAACGAGAAATGTGGCTATCTGAAGCAGCCCAAAGGCTTCTCCTCGCGCTCCATTCACGCAGGGCAGGATCCAAAGCAGTGGAAGTCCGGCGCGATAATTCCGCCGATAATGACGTCGGTTGTGTACGAGCAGTCGGTGCCGCGAAACCACAGCGACTTCTTCTACTCGCGTCTCGGCAATCCCACGCGAAGCGTTCTCGAGGAGTGCCTGGCCGGCATCGAAAACTCAAAGTTTGCGCTGGCCTTCGCGTCGGGCATCTCGGCCATCACGGCCATCCTCGCGACCCTTAAGAAGGGCGACGGAATAATTTGCAGCAAGTACTTCTACGCGGGCACCCTCGACTCGATGCAGATCGCCGAGCAGATGGGCTTCGACGTGCAGTACATCGACTTCACCGACCTGCGCAACCTCGTGGCCGCCATCCGGCCCAACACGAAGCTCGTCTGGACGGAGCCGCTCATGAACCCCACGATGGCCGTCGTGGACATCAAGGCGACCGTCGAAATCACGCACTCGAAGGCTCGCGACGCTCTCGTTATCGTCGACAACACCTTTCTCACGCCGTACTTCATGCGGCCTCTCGAGCTCGGCGCCGACATTGCGCTCTACTCGCTGACGAAGTATTTTTCGGGGCACTCGGACGTCCTCGGCGGGTCAATCGCGTGCAACGACGAAAAGCTGTTTCGATTGCTGAAGAAGTCGCAGGGAGCGACCGGCACGATGGCACAACCCTTCGAGTCTTACTTCGTCATCAGGAGCGTCAAAACCTTGTCGATTCGGATGGACAGGCATGCGGAGATCTCCTACGCGGTCGCCAAATTCCTCGAGTCTCATCCGAAAGTCGGACGAGTCAACCATCCGGCACTGAAATCGCACCCGGGACACGCGATTGCGATCCGGCAGTCGTACGGTCATTCGGGCATCTTCTCGTTCAGCCTCAAGGACGACTGCTACGAGACGACGAAGCGGTTTTTTGCGGCACTCAAGTTCATCGTGGTAGCGACGAGTTTGGGCGGCGTGGAAACCACGGTAGCCTTTCCACGTGAAATGTCGCACTCAGGGTTCAGTGATGAGGAAGCTCTTCGCATGGGCGTCACAAAGAGCCTCATTCGTCTCTCGGTGGGCATCGAGGATGTTGAGGACATTGTTGGGGACTTGCGGGAGGCATTGAATGAAGCT
Protein: 406 (aa)
MDQLSDNFERISINEKCGYLKQPKGFSSRSIHAGQDPKQWKSGAIIPPIMTSVVYEQSVPRNHSDFFYSRLGNPTRSVLEECLAGIENSKFALAFASGISAITAILATLKKGDGIICSKYFYAGTLDSMQIAEQMGFDVQYIDFTDLRNLVAAIRPNTKLVWTEPLMNPTMAVVDIKATVEITHSKARDALVIVDNTFLTPYFMRPLELGADIALYSLTKYFSGHSDVLGGSIACNDEKLFRLLKKSQGATGTMAQPFESYFVIRSVKTLSIRMDRHAEISYAVAKFLESHPKVGRVNHPALKSHPGHAIAIRQSYGHSGIFSFSLKDDCYETTKRFFAALKFIVVATSLGGVETTVAFPREMSHSGFSDEEALRMGVTKSLIRLSVGIEDVEDIVGDLREALNEA
| Type | Start | End | Length |
| CDS |
58441 |
59530 |
1090 |
| CDS |
59605 |
59732 |
128 |
| intron |
59531 |
59604 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001848094 |
cystathionine gamma-lyase [Culex quinquefasciatus] gb|EDS27616.1| cystathionine gamma-lyase [Culex quinquefasciatus] |
1e-111 |
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR000277 |
Cys/Met metabolism, pyridoxal phosphate-dependent enzyme |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| Gene Ontology(BP) |
GO:0006520 |
cellular amino acid metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Pfam |
PF00155.16 |
Aminotransferase class I and II |
1.5e-06 |
| Pfam |
PF01041.12 |
DegT/DnrJ/EryC1/StrS aminotransferase family |
4.1e-05 |
| Pfam |
PF06838.6 |
Aluminium resistance protein |
0.0002 |
| Pfam |
PF01053.15 |
Cys/Met metabolism PLP-dependent enzyme |
3.9e-122 |
| Pfam |
PF00266.14 |
Aminotransferase class-V |
1.9e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.07794 |